Faculty

Institution

Unit

Venue

Robert F. Murphy

Ray and Stephanie Lane Professor of Computational Biology

Carnegie Mellon University

Affiliations

Mellon College of Science

Biological Sciences

School of Computer Science

Computational Biology

Robert F. Murphy is currently serving as a Biological Sciences Ray and Stephanie Lane Professor of Computational Biology at Carnegie Mellon University.

Honors

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Experiences

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Education

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Robert F. Murphy

Carnegie Mellon University

Ray and Stephanie Lane Professor of Computational Biology

You can click a keyword to filter the displayed items

cell biology molecular biology bioinformatics biological imaging computational biology bioimage analysis biophysics cell research image analysis biomedical informatics biomedical imaging protein science cellular biochemistry microscopy cell detection cellular physiology microscope image processing medical image computing theoretical biology membrane biology molecular cell biology protein bioinformatics structural biology immunology pattern recognition spatial omics cell biophysics biological chemistry computational imaging cellular biology knowledge discovery cellular structure fluorescence microscope images genome biology molecular physiology cell physiology cell culture subcellular location patterns cancer biology location proteomics flow cytometry cytopathology biomedical text mining subcellular location cellular enzymology protein subcellular location image segmentation subcellular patterns mammalian biology optical image recognition shape analysis active learning rna biology image classification shape modeling dna analysis applied physiology cytogenetics structural bioinformatics tissue physiology generative models medical image analysis graphical models nuclear shape protein localization patterns endosomal ph information extraction cancer detection protein localization lysosome biogenesis genome structure optical engineering hela cells fluorescence microscopy images automated classification protein subcellular locations engineering education molecular and cellular biology health services research human cells engineering management management engineering electrical insulation carcinogenesis health systems electricity generation cardiovascular fitness cell and molecular biology tumor biology circulatory physiology public health systems healthcare provision cancer research system engineering education medical devices physiological measurements cancer cells health care oncogenic agent translational physiology electrical engineering technology cancer letter molecular metabolism electrophysiology health planning metabolic pathways clinical physiology international health

Notable Scholarly Works

Notable Federal Grants

Collaborators

SPRM: Spatial Process and Relationship Modeling for Multiplexed Images. (2026)

computer graphicsvisual computinggraphicsapplied mathematicscomputational imagingdigital image processingdata scienceimage analysisimage formation

3Dcellcomposer − a Versatile Pipeline Utilizing 2D Cell Segmentation Methods for 3D Cell Segmentation. Methods (2025)

cell segmentation methodsa versatile pipelinebiological imagingcell biologycell detectioncell segmentationbiomedical engineeringcell engineeringbioimage analysiscell researchbiofabrication

3Dcellcomposer-a Versatile Pipeline Utilizing 2D Cell Segmentation Methods for 3D Cell Segmentation☆. METHODS (2025)

biomedical analysisstem cell researchmatrix biologystem cellsbioimage analysiscell researchconfocal microscopybiomedical imagingbiological imaging3d imagingbiofabricationbiological engineeringmicroscopydevelopmental cellcell manipulationcell detectionmicroscope image processingtissue (biology)biophysicsbiomedical engineeringcell engineeringgeometric modeling

Big1 is a Cell Cycle Regulator Linking Cell Size to Basal Body Number. (2025)

molecular and cellular biologycell cyclecell proliferationcell growthcell biologycellular physiologybody numbercell divisiondevelopmental biologymolecular cell biologycell cycle regulatorsignal transductioncell regulationcell size

Big1 is a Cell Cycle Regulator Linking Cell Size to Basal Body Number. bioRxiv (2025)

molecular and cellular biologydevelopmental biologycellular biologycell researchcell signalingcellular senescencecell biologyepigeneticsoncogenescell cycleplo biologydevelopmental cellcellular physiologycell divisionsystems biologycell regulationaging cellcellular differentiationmolecular medicinemolecular cell biologychromatincell lineage

CYTOSPATIO: Learning Cell Type Spatial Relationships Using Multirange, Multitype Point Process Models. PLOS COMPUTATIONAL BIOLOGY (2025)

biological network visualizationquantitative biologycell researchbioinformaticscell and molecular biologymathematical biosciencebiophysical reviewmolecular biologycell biophysicscomputational biologybiomedical informaticsplo biologytheoretical biologybiosystemsmulticellular systemsmolecular informaticsspatial omicssystems biologybiophysicsbiological modelsmathematical biologypattern formation

CYTOSPATIO: Learning Cell Type Spatial Relationships Using Multirange, Multitype Point Process Models. PLoS Computational Biology (2025)

computational biologybiomedical informaticstheoretical biologycell biologybiological network visualizationquantitative biologyspatial omicssystems biologycell research

Flexible and Robust Cell-Type Annotation for Highly Multiplexed Tissue Images. CELL SYSTEMS (2025)

tissue imagingbiomedical analysismatrix biologysingle-cell analysisbioimage analysiscell researchconfocal microscopybiomedical imagingbiological imagingcell biologynovel imaging methodsmedical optical imagingbiomedical informaticscell detectionmolecular imagingsystems biologyimage analysistissue (biology)medical image computingcancer imagingbiomedical engineeringcell engineering

Human Biomolecular Atlas Program (Hubmap): 3d Human Reference Atlas Construction and Usage. NATURE METHODS (2025)

anatomical modelbiological network visualizationcomputer-aided designbioinformaticsbiomedical data analysisinformation visualizationtranslational researchdata and information visualizationmolecular biologyomicscomputational anatomyvisualizationtranslational bioinformaticscomputational biologybiomedical informaticsmolecular informaticsscientific datasystems biologymedical image computingbiostatisticsnature methodgeometric modeling

3Dcellcomposer - a Versatile Pipeline Utilizing 2D Cell Segmentation Methods for 3D Cell Segmentation. bioRxiv (Cold Spring Harbor Laboratory) (2024)

Haoran ChenRobert F. Murphy

cell segmentationcell biologymicroscopy

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Robert F. Murphy

Ray and Stephanie Lane Professor of Computational Biology

Carnegie Mellon University

Affiliations

Mellon College of Science

Biological Sciences

School of Computer Science

Computational Biology

Robert F. Murphy is currently serving as a Biological Sciences Ray and Stephanie Lane Professor of Computational Biology at Carnegie Mellon University.

Honors

Create free account to unlock more features

Experiences

Create free account to unlock more features

Education

Create free account to unlock more features

Robert F. Murphy

Carnegie Mellon University

Ray and Stephanie Lane Professor of Computational Biology

You can click a keyword to filter the displayed items

Notable Scholarly Works

Notable Federal Grants

Collaborators

SPRM: Spatial Process and Relationship Modeling for Multiplexed Images. (2026)

computer graphicsvisual computinggraphicsapplied mathematicscomputational imagingdigital image processingdata scienceimage analysisimage formation

3Dcellcomposer − a Versatile Pipeline Utilizing 2D Cell Segmentation Methods for 3D Cell Segmentation. Methods (2025)

cell segmentation methodsa versatile pipelinebiological imagingcell biologycell detectioncell segmentationbiomedical engineeringcell engineeringbioimage analysiscell researchbiofabrication

3Dcellcomposer-a Versatile Pipeline Utilizing 2D Cell Segmentation Methods for 3D Cell Segmentation☆. METHODS (2025)

Big1 is a Cell Cycle Regulator Linking Cell Size to Basal Body Number. (2025)

Big1 is a Cell Cycle Regulator Linking Cell Size to Basal Body Number. bioRxiv (2025)

CYTOSPATIO: Learning Cell Type Spatial Relationships Using Multirange, Multitype Point Process Models. PLOS COMPUTATIONAL BIOLOGY (2025)

CYTOSPATIO: Learning Cell Type Spatial Relationships Using Multirange, Multitype Point Process Models. PLoS Computational Biology (2025)

computational biologybiomedical informaticstheoretical biologycell biologybiological network visualizationquantitative biologyspatial omicssystems biologycell research

Flexible and Robust Cell-Type Annotation for Highly Multiplexed Tissue Images. CELL SYSTEMS (2025)

Human Biomolecular Atlas Program (Hubmap): 3d Human Reference Atlas Construction and Usage. NATURE METHODS (2025)

3Dcellcomposer - a Versatile Pipeline Utilizing 2D Cell Segmentation Methods for 3D Cell Segmentation. bioRxiv (Cold Spring Harbor Laboratory) (2024)

Haoran ChenRobert F. Murphy

cell segmentationcell biologymicroscopy

1
2
3
4
5
59
10 / page

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Similar Faculty Members

Michelle Digman

Institution

University of California, Irvine

biophysics

cell biology

David W. Piston

Institution

Washington University in St. Louis

endocrinology

metabolism

Barbara A. Baird

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Cornell University

membrane protein

biochemistry

Scott E. Fraser, PhD

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cancer letter

pathology

Mark Alber

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mathematical bioscience

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Jonathan Weissman

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signaling pathway

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