Faculty

Institution

Unit

Venue

Fabrizio Marinelli

Associate Professor; Recruitment Director Biophysics Graduate Program

Medical College of Wisconsin

Affiliations

Cardiovascular Biology

Data Science Institute

Department of Biophysics

Graduate School

Fabrizio Marinelli is currently serving as a Cardiovascular Biology Associate Professor; Recruitment Director Biophysics Graduate Program at Medical College of Wisconsin.

Honors

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Experiences

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Education

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Fabrizio Marinelli

Medical College of Wisconsin

Associate Professor; Recruitment Director Biophysics Graduate Program

You can click a keyword to filter the displayed items

biophysics molecular biology biophysical chemistry biophysical modeling molecular modelling biochemistry chemistry protein structure molecular biophysics computational chemistry protein science structural biology biomolecular structure molecular structure membrane biology molecular science biophysical review structural molecular biology computational biophysics protein folding numerical simulations quantum chemistry molecular physiology single molecule biophysics protein assembly experimental biophysics atomistic simulations scientific computing molecular cell biology protein modeling molecular dynamics molecular dynamics simulations ensemble-biased metadynamics structural chemistry antiviral research protein structure prediction protein misfolding protein transport supramolecular chemistry protein chemistry ion exchange mitochondrial function theoretical prediction receptor (biochemistry) wildlife biology enhanced molecular simulations biomolecular flexibility virus research general virology proteome research molecular docking reproducible research computational reproducibility charge transport viral structural protein biomolecular analysis novel interface gene function default logic feedback loop model dissemination session types wildlife ecology wildlife management molecular tectonics residual stress free-energy calculations portable plugin kinetic model trp-cage folding explicit-solvent atomistic simulations extracellular ion exchange binding-site occlusion vmd interface multidimensional system metadynamics convergence law membrane transport molecular design systems biology molecular informatics

Notable Scholarly Works

Notable Federal Grants

Collaborators

Plumed Tutorials: A Collaborative, Community-Driven Learning Ecosystem. The Journal of Chemical Physics (2025)

Gareth A. TribelloMassimiliano BonomiGiovanni BussiCarlo CamilloniBlake I. ArmstrongAndrea ArsiccioSimone AureliFederico BallabioMattia BernettiLuigi BonatiSamuel G. H. BrookesZ. Faidon BrotzakisRiccardo CapelliMichele CeriottiKam-Tung ChanPilar CossioSiva DasettyDavide DonadioBernd EnsingAndrew L. FergusonGuillaume FrauxJulian D. GaleFrancesco Luigi GervasioToni GiorginoNicholas S. M. HerringerGlen M. HockySamuel E. HoffMichele InvernizziOlivier Languin-CattoënVanessa LeoneVittorio LimongelliOlga Lopez-AcevedoFabrizio MarinelliPedro Febrer MartinezMatteo MasettiShams MehdiAngelos MichaelidesMhd Hussein MurtadaMichele ParrinelloPablo M. PiaggiAdriana PietropaoloFabio PietrucciSilvio PipoloClaire PritchardPaolo RaiteriStefano RanioloDaniele RapettiValerio RizziJakub RydzewskiMatteo SalvalaglioChristoph SchranAniruddha SealArmin Shayesteh ZadehTomás F. D. SilvaVojtěch SpiwokGuillaume StirnemannDaniel SucerquiaPratyush TiwaryOmar ValssonMichele VendruscoloGregory A. VothAndrew D. WhiteJiangbo Wu

interactive learningcollaborative learningeducationcommunity-driven learning ecosystemlearning scienceshuman-computer interactiononline learningonline learning communitiesdigital learning

Plumed Tutorials: A Collaborative, Community-Driven Learning Ecosystem. J Chem Phys (2025)

educational strategieseducationcollaborative learninglearning sciencescomputer-supported collaborative learninglearning analyticsplumed tutorialsonline learning communities

Conformational Free-Energy Landscapes of a Na+/Ca2+ Exchanger Explain Its Alternating-Access Mechanism and Functional Specificity. Proc Natl Acad Sci U S A (2024)

biophysicsfunctional specificityconformational free-energy landscapesconformational studiesphysical chemistrymolecular sciencemolecular structuremolecular biophysicschemistryna+/ca2+ exchangermolecular physicsbiophysical chemistry

Conformational Free-Energy Landscapes of a Na + /Ca 2+ Exchanger Explain Its Alternating-Access Mechanism and Functional Specificity. Proceedings of the National Academy of Sciences (2024)

Fabrizio MarinelliJosé D. Faraldo-Gómez

functional specificityalternating-access mechanismchemistryconformational free-energy landscapes

Expanded Functionality and Portability for the Colvars Library. The Journal of Physical Chemistry B (2024)

Giacomo FiorinFabrizio MarinelliLucy R. ForrestHaochuan ChenChristophe ChipotAxel KohlmeyerHubert SantuzJérôme Hénin

chemistryphysical chemistry

Towards Molecular Level Understanding of Drug Resistance and Toxicity. NIH Intramural Research Program – Stadtman Investigator Project (2023)

drug targetsdrug resistance analysisbiochemistrymolecular informaticsdrug resistancepharmacologymolecular pharmacology

Differential Ion Dehydration Energetics Explains Selectivity in the Non-Canonical Lysosomal K+ Channel Tmem175. eLife (2022)

SeCheol OhFabrizio MarinelliWenchang ZhouJooyeon LeeHo Jeong ChoiMin KimJosé D Faraldo-GómezRichard K Hite

biophysicsmembrane proteinsbiochemistrymolecular biophysicsbioenergeticsmembrane biologymembranesmolecular biologymembrane permeation

Interpreting Hydrogen-Deuterium Exchange Experiments With Molecular Simulations: Tutorials and Applications of the Hdxer Ensemble Reweighting Software [Article V1.0]. Living Journal of Computational Molecular Science (2022)

Paul Suhwan LeeRichard T. BradshawFabrizio MarinelliKyle KihnAlly SmithPatrick L. WintrodeDaniel J. DeredgeJosé D. Faraldo-GómezLucy R. Forrest

biophysicshydrogen-deuterium exchange experimentsscientific computingmolecular simulations

Interpreting Hydrogen-Deuterium Exchange Experiments With Molecular Simulations: Tutorials and Applications of the Hdxer Ensemble Reweighting Software [Article V1.0]. Living J Comput Mol Sci (2022)

hydrogen transitionhigh-energy nuclear reactionchemical thermodynamicschemical physicsmolecular simulationsphysicsmolecular modellingquantum chemistrycomputational chemistryphysical chemistrynuclear scienceproton transferchemistryhydrogen-deuterium exchange experimentshydrogen bondhydrogen

The Alternating-Access Mechanism of Transport of the Na+/Ca2+ Exchanger. Biophysical Journal (2022)

Fabrizio MarinelliEmel FiciciJosé D. Faraldo-Gómez

biophysicsbiophysical chemistryalternating-access mechanismbiophysical modeling

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Fabrizio Marinelli

Associate Professor; Recruitment Director Biophysics Graduate Program

Medical College of Wisconsin

Affiliations

Cardiovascular Biology

Data Science Institute

Department of Biophysics

Graduate School

Fabrizio Marinelli is currently serving as a Cardiovascular Biology Associate Professor; Recruitment Director Biophysics Graduate Program at Medical College of Wisconsin.

Honors

Create free account to unlock more features

Experiences

Create free account to unlock more features

Education

Create free account to unlock more features

Fabrizio Marinelli

Medical College of Wisconsin

Associate Professor; Recruitment Director Biophysics Graduate Program

You can click a keyword to filter the displayed items

Notable Scholarly Works

Notable Federal Grants

Collaborators

Plumed Tutorials: A Collaborative, Community-Driven Learning Ecosystem. The Journal of Chemical Physics (2025)

interactive learningcollaborative learningeducationcommunity-driven learning ecosystemlearning scienceshuman-computer interactiononline learningonline learning communitiesdigital learning

Plumed Tutorials: A Collaborative, Community-Driven Learning Ecosystem. J Chem Phys (2025)

educational strategieseducationcollaborative learninglearning sciencescomputer-supported collaborative learninglearning analyticsplumed tutorialsonline learning communities

Conformational Free-Energy Landscapes of a Na+/Ca2+ Exchanger Explain Its Alternating-Access Mechanism and Functional Specificity. Proc Natl Acad Sci U S A (2024)

Conformational Free-Energy Landscapes of a Na + /Ca 2+ Exchanger Explain Its Alternating-Access Mechanism and Functional Specificity. Proceedings of the National Academy of Sciences (2024)

Fabrizio MarinelliJosé D. Faraldo-Gómez

functional specificityalternating-access mechanismchemistryconformational free-energy landscapes

Expanded Functionality and Portability for the Colvars Library. The Journal of Physical Chemistry B (2024)

Giacomo FiorinFabrizio MarinelliLucy R. ForrestHaochuan ChenChristophe ChipotAxel KohlmeyerHubert SantuzJérôme Hénin

chemistryphysical chemistry

Towards Molecular Level Understanding of Drug Resistance and Toxicity. NIH Intramural Research Program – Stadtman Investigator Project (2023)

drug targetsdrug resistance analysisbiochemistrymolecular informaticsdrug resistancepharmacologymolecular pharmacology

Differential Ion Dehydration Energetics Explains Selectivity in the Non-Canonical Lysosomal K+ Channel Tmem175. eLife (2022)

SeCheol OhFabrizio MarinelliWenchang ZhouJooyeon LeeHo Jeong ChoiMin KimJosé D Faraldo-GómezRichard K Hite

biophysicsmembrane proteinsbiochemistrymolecular biophysicsbioenergeticsmembrane biologymembranesmolecular biologymembrane permeation

Paul Suhwan LeeRichard T. BradshawFabrizio MarinelliKyle KihnAlly SmithPatrick L. WintrodeDaniel J. DeredgeJosé D. Faraldo-GómezLucy R. Forrest

biophysicshydrogen-deuterium exchange experimentsscientific computingmolecular simulations

Interpreting Hydrogen-Deuterium Exchange Experiments With Molecular Simulations: Tutorials and Applications of the Hdxer Ensemble Reweighting Software [Article V1.0]. Living J Comput Mol Sci (2022)

The Alternating-Access Mechanism of Transport of the Na+/Ca2+ Exchanger. Biophysical Journal (2022)

Fabrizio MarinelliEmel FiciciJosé D. Faraldo-Gómez

biophysicsbiophysical chemistryalternating-access mechanismbiophysical modeling

1
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7
10 / page

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theoretical biology

quantum biology

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computational biology

amyloid peptides

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mechanosensitive channels

multi-scale modeling

Daniel Zuckerman

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theoretical biology

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biophysics

structural biology

Mahmoud Moradi

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protein modeling

biomolecular structure

Ulrich H.E. Hansmann

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protein refolding

biomolecular structure

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biomolecular engineering

single-molecule detection

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biotechnology advance

biomolecular engineering