Faculty

Institution

Unit

Venue

Sameer Varma

Professor

University of South Florida

Affiliations

College of Arts and Sciences

School of Natural Sciences and Mathematics

Department of Molecular Biosciences

Department of Physics

Sameer Varma is currently serving as a College Of Arts And Sciences Professor at University of South Florida.

Honors

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Experiences

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Education

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Sameer Varma

University of South Florida

Professor

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biophysics molecular biology biophysical chemistry molecular biophysics protein science chemistry computational chemistry physical chemistry structural biology molecular science ion structure materials science theoretical chemistry quantum chemistry structural molecular biology membrane science chemical physics protein structure protein modeling molecular structure ion channels virus research membrane transport nanotechnology molecular physiology chemical sciences functional selectivity viral structural protein ion binding medicinal research receptor (biochemistry) molecular basis protein function membrane permeation methyl-induced polarization ion selectivity fibers mechanical science mathematical chemistry solution (chemistry) dynamic nuclear polarization elasticity (physics) molecular microbiology bacteriology lithium-ion batteries ion coordination higher affinity local configurations theoretical study aqueous solvation fixed-charge models genome biology plo biology bone research biomolecular analysis receptor tyrosine kinases molecular biotechnology molecular research nanomechanics membrane systems microbial physiology human physiology polarization imaging protein chemistry fiber science fibrosis interface chemistry surface reactivity nanobiotechnology membrane computing aqueous solutions alkali metal ions coordination numbers selective partitioning elastic modulus structural transitions molecular mechanics quantum biology theoretical biology molecular computing molecular modelling

Notable Scholarly Works

Notable Federal Grants

Collaborators

Atp-Ion Complexation and Lithium’s Bioactive Form in Cellular Solutions. Journal of the American Chemical Society (2025)

biophysical chemistryatp-ion complexationbiochemistrylithium-ion batteriescellular biochemistrychemical biology

MLMD: Machine Learning Velocities to Propagate Molecular Dynamics Simulations. (2025)

computational chemistrybiophysicscomputational biologyscientific computingdata sciencemolecular modellingphysic aware machine learningmolecular dynamics simulationsmolecular biophysics

Velocity Updates From Machine Learning for Stable Molecular Dynamics Integration. (2025)

computational chemistrycomputational sciencemolecular computingbiophysicsnonlinear dynamicscomputational biologymachine learningtheoretical biologyscientific computingdata sciencemolecular modellingcomputational biophysicsmolecular sciencesystems biology

A Semi‐Automated Workflow for Dia‐Based Global Discovery to Pathway‐Driven Prm Analysis. PROTEOMICS (2024)

Jennifer GuerguesJessica WohlfahrtJohn M. KoomenJonathan R. KriegerSameer VarmaStanley M. Stevens

deep learningsemi-automated workflowbioinformaticspathway-driven prm analysismachine learningdia-based global discoverydata sciencetranslational bioinformatics

P53Tad Accesses a Second Pocket in Mdm2 and Mdmx for Tighter Binding. Biophysical Journal (2024)

Guy W. DayhoffPirada S. HigbeeAsokan AnbanadamSameer VarmaGary W. Daughdrill

pharmacologymembrane biologygene expressionbiophysicsoncologymolecular biologytumor biologysecond pockettighter binding

Polarizable Amoeba Model for Simulating Mg2+·Protein·Nucleotide Complexes. Biophysical Journal (2024)

Julian A. MelendezPeter R. NagySameer Varma

numerical simulationsbiophysical chemistrybiological engineeringbiophysicsbiophysical modelingcomputational biologycomputational biophysicsmolecular modellingmolecular biologyprotein modelingbiomedical modelingprotein sciencepolarizable amoeba modelmolecular biophysics

Structural Adaptation of Secondary P53 Binding Sites on Mdm2 and Mdmx. Journal of Molecular Biology (2024)

Pirada Serena HigbeeGuy W. DayhoffAsokan AnbanandamSameer VarmaGary Daughdrill

geneticsstructural adaptationstructural biologyprotein structuremolecular biologycancer geneticstumor biology

Biochemical Properties of Naturally Occurring Human Bloom Helicase Variants. PLoS ONE (2023)

Rachel R. CuenySameer VarmaKristina H. SchmidtJames L. Keck

geneticsmolecular biologymolecular and cellular biologybiochemistry

Characterizing and Mapping Volcanic Flow Deposits on Mount St. Helens via Dual-Band Sar Imagery. Remote Sensing (2023)

Nikola RogicSylvain J. CharbonnierFranco GarinGuy W. Dayhoff IIEric GaglianoMel RodgersCharles B. ConnorSameer VarmaDavid Shean

optical remote sensingenvironmental sciencesynthetic aperture radarremote sensingdual-band sar imagerysatellite imagingearth scienceplanetary sciencesvolcanologyearth observation

Improved Polarizable Force Field for Modeling Mg2+ Binding to Proteins and Nucleotides. Biophysical Journal (2023)

Julian A. MelendezPeter R. NagySameer Varma

biophysical chemistrybiophysicsstructural biologycomputational biologybiophysical modelingneurosciencecomputational biophysicsmolecular modellingmolecular biologypolarizable force fieldprotein modelingexperimental biophysicsprotein sciencemolecular biophysics

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Sameer Varma

Professor

University of South Florida

Affiliations

College of Arts and Sciences

School of Natural Sciences and Mathematics

Department of Molecular Biosciences

Department of Physics

Sameer Varma is currently serving as a College Of Arts And Sciences Professor at University of South Florida.

Honors

Create free account to unlock more features

Experiences

Create free account to unlock more features

Education

Create free account to unlock more features

Sameer Varma

University of South Florida

Professor

You can click a keyword to filter the displayed items

Notable Scholarly Works

Notable Federal Grants

Collaborators

Atp-Ion Complexation and Lithium’s Bioactive Form in Cellular Solutions. Journal of the American Chemical Society (2025)

biophysical chemistryatp-ion complexationbiochemistrylithium-ion batteriescellular biochemistrychemical biology

MLMD: Machine Learning Velocities to Propagate Molecular Dynamics Simulations. (2025)

computational chemistrybiophysicscomputational biologyscientific computingdata sciencemolecular modellingphysic aware machine learningmolecular dynamics simulationsmolecular biophysics

Velocity Updates From Machine Learning for Stable Molecular Dynamics Integration. (2025)

A Semi‐Automated Workflow for Dia‐Based Global Discovery to Pathway‐Driven Prm Analysis. PROTEOMICS (2024)

Jennifer GuerguesJessica WohlfahrtJohn M. KoomenJonathan R. KriegerSameer VarmaStanley M. Stevens

deep learningsemi-automated workflowbioinformaticspathway-driven prm analysismachine learningdia-based global discoverydata sciencetranslational bioinformatics

P53Tad Accesses a Second Pocket in Mdm2 and Mdmx for Tighter Binding. Biophysical Journal (2024)

Guy W. DayhoffPirada S. HigbeeAsokan AnbanadamSameer VarmaGary W. Daughdrill

pharmacologymembrane biologygene expressionbiophysicsoncologymolecular biologytumor biologysecond pockettighter binding

Polarizable Amoeba Model for Simulating Mg2+·Protein·Nucleotide Complexes. Biophysical Journal (2024)

Julian A. MelendezPeter R. NagySameer Varma

Structural Adaptation of Secondary P53 Binding Sites on Mdm2 and Mdmx. Journal of Molecular Biology (2024)

Pirada Serena HigbeeGuy W. DayhoffAsokan AnbanandamSameer VarmaGary Daughdrill

geneticsstructural adaptationstructural biologyprotein structuremolecular biologycancer geneticstumor biology

Biochemical Properties of Naturally Occurring Human Bloom Helicase Variants. PLoS ONE (2023)

Rachel R. CuenySameer VarmaKristina H. SchmidtJames L. Keck

geneticsmolecular biologymolecular and cellular biologybiochemistry

Characterizing and Mapping Volcanic Flow Deposits on Mount St. Helens via Dual-Band Sar Imagery. Remote Sensing (2023)

Nikola RogicSylvain J. CharbonnierFranco GarinGuy W. Dayhoff IIEric GaglianoMel RodgersCharles B. ConnorSameer VarmaDavid Shean

optical remote sensingenvironmental sciencesynthetic aperture radarremote sensingdual-band sar imagerysatellite imagingearth scienceplanetary sciencesvolcanologyearth observation

Improved Polarizable Force Field for Modeling Mg2+ Binding to Proteins and Nucleotides. Biophysical Journal (2023)

Julian A. MelendezPeter R. NagySameer Varma

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mechanosensitive channels

multi-scale modeling

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molecular design

molecular science

Ron Elber

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