Faculty

Institution

Unit

Venue

Juan Vanegas

Associate Professor

Oregon State University

Affiliations

College of Science

Department of Biochemistry and Biophysics

Juan Vanegas is currently serving as a College Of Science Associate Professor at Oregon State University.

Honors

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Experiences

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Education

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Juan Vanegas

Oregon State University

Associate Professor

You can click a keyword to filter the displayed items

biophysics membrane biology membranes molecular biology membrane science materials science structural biology lipids protein science biophysical modeling computational biophysics condensed matter physics proteinlipid interaction biological engineering molecular biophysics membrane structure enzymes biophysical review condensed matter biomolecular structure nanotechnology structural molecular biology enzyme catalysis molecular physiology lipid science biochemical sciences membrane transport local stress calculations chemical sciences membrane technology experimental biophysics membrane systems lipid chemistry force transduction bioenergetics vascular biology interface chemistry protein modeling biomolecular interactions protein function mechanical equilibrium molecular simulations hydration mimicry advanced separations yeast membrane characterization fragmentation effect gene characterization hyperpolarization (biology) solid-state physics carbon dioxide model yeast biomembranes microscopic stress therapeutic l-asparaginase plo biology crystal engineering liver physiology plant biotechnology friction biophysical aspect catalytic applications separation technology functional modification host specificity molecular biotechnology continuum modeling protein transport protein chemistry physical layer biomembrane molecular simulations force decomposition ethanol tolerance microscopic stresses geometric derivation lipid binding membrane ion channels membrane computing mechanical science quantum biology multiscale modeling multi-scale modeling mechanosensitive channels soft matter mechanical engineering multiscale material

Notable Scholarly Works

Notable Federal Grants

Collaborators

Bps2025 - Free Energy Analysis of Selective Cation Transport in the Channelrhodopsin Chimera C1c2. Biophysical Journal (2025)

Susan RempeLindsey A. PrignanoMark J. StevensJuan M. VanegasRobert E. Dempski

biophysicschannelrhodopsin chimera c1c2biomoleculesmembrane transportselective cation transportbiochemistrybioenergeticsorganic chemistrypolysaccharidesbiophysical chemistryfree energy analysis

Bps2025 - the Lipid-Mediated Mechanism of Mscs Inactivation. Biophysical Journal (2025)

Elissa MollerMadolyn BrittKatsuhiro SawasatoAndriy AnishkinMikhail BogdanovJuan M. VanegasDoreen MatthiesSergei Sukharev

biophysicslipidsbiophysical reviewbiophysical modelingbiophysical chemistrylipid-mediated mechanismmscs inactivation

Microscopic Elasticity From MD Part I: Bulk Solid and Fluid Systems. (2025)

md partfracture mechanicssolid mechanicsmechanicselasticity (physics)interface sciencenonlinear elasticitymicroscopic elasticitymechanical engineeringrheologymechanical sciencecontinuum mechanicscomplex fluidsmechanics of materialsfluid sciencefluid systemsapplied physicsdeformation

Microscopic Elasticity From MD Part II: Liquid Interfaces and Lipid Membranes. (2025)

biophysicsmembrane structureinterfacial phenomenalipid membranesinterface sciencemicroscopic elasticitymembrane biologymembrane sciencemembranesmolecular liquidsbiomolecular engineeringmd part ii

Successful Prediction of Lc8 Binding to Intrinsically Disordered Proteins Sheds Light on Alphafold’s Black Box. Frontiers in Molecular Biosciences (2025)

protein structure predictionprotein structureproteomicssuccessful predictionprotein scienceprotein misfoldingbiomolecular structureprotein functionprotein modelingbiochemistryprotein assemblyblack boxmolecular biologyprotein foldingstructural molecular biologystructural biologyalphafold ’

Thermal Degradation Energy Landscapes of Fluorofentanyls: Probing the Mechanisms and Energetics of Bond Breaking. (2025)

biophysicschemical sciencesbond breakingchemical thermodynamicschemical physicschemical bondmolecular kineticsphysical chemistrychemistryorganic chemistrymolecular structure

Atomically Thin Superfluid and Solid Phases for Atoms on Strained Graphene. Physical review. B./Physical review. B (2024)

Sang Wook KimMohamed Marwan ElsayedNathan S. NicholsTaras LakobaJuan VanegasCarlos WexlerValeri N. KotovAdrian Del Maestro

solid-state electronicsphysicscondensed matteratomic physicssolid-state physicsoptoelectronicshigh energy physicselectronic materialsstrained graphenegraphenephysical layersolid phasesapplied physicsthin filmscondensed matter physicsmaterials science

Mapping the Tension-Gated Transition of the Bacterial Mscs With MD Simulations. Biophysical Journal (2024)

Monica M. Vidal-FrancoAndriy AnishkinSergei I. SukharevJuan M. Vanegas

biophysicscomputational biologymd simulationsbacterial mscscomputational biophysicstension-gated transitionmodeling and simulationbiophysical modeling

Metadynamics Simulations Reveal Mechanisms of Na+ and Ca2+ Transport in Two Open States of the Channelrhodopsin Chimera, C1c2. PLoS ONE (2024)

Lindsey A PrignanoMark J StevensJuan M VanegasSusan B RempeRobert E Dempski

biophysicscation transportion permeationoptogeneticsmembrane transportca2+ transportelectrophysiologycellular physiologybiochemistrymolecular biophysicsmolecular physiologyhyperpolarization (biology)molecular biologybiophysical modelingbiophysical chemistry

Modeling the Elastic Properties of Soft Materials From Molecular Dynamics Simulations. Biophysical Journal (2024)

Andrew L. LewisBenjamin E. HimbergJuan M. Vanegas

biophysicsphysicsmaterial modelingbiophysical modelingelastic propertiesmolecular dynamics simulationscondensed matter physicsmaterials sciencesoft materials

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Juan Vanegas

Associate Professor

Oregon State University

Affiliations

College of Science

Department of Biochemistry and Biophysics

Juan Vanegas is currently serving as a College Of Science Associate Professor at Oregon State University.

Honors

Create free account to unlock more features

Experiences

Create free account to unlock more features

Education

Create free account to unlock more features

Juan Vanegas

Oregon State University

Associate Professor

You can click a keyword to filter the displayed items

Notable Scholarly Works

Notable Federal Grants

Collaborators

Bps2025 - Free Energy Analysis of Selective Cation Transport in the Channelrhodopsin Chimera C1c2. Biophysical Journal (2025)

Susan RempeLindsey A. PrignanoMark J. StevensJuan M. VanegasRobert E. Dempski

biophysicschannelrhodopsin chimera c1c2biomoleculesmembrane transportselective cation transportbiochemistrybioenergeticsorganic chemistrypolysaccharidesbiophysical chemistryfree energy analysis

Bps2025 - the Lipid-Mediated Mechanism of Mscs Inactivation. Biophysical Journal (2025)

Elissa MollerMadolyn BrittKatsuhiro SawasatoAndriy AnishkinMikhail BogdanovJuan M. VanegasDoreen MatthiesSergei Sukharev

biophysicslipidsbiophysical reviewbiophysical modelingbiophysical chemistrylipid-mediated mechanismmscs inactivation

Microscopic Elasticity From MD Part I: Bulk Solid and Fluid Systems. (2025)

Microscopic Elasticity From MD Part II: Liquid Interfaces and Lipid Membranes. (2025)

biophysicsmembrane structureinterfacial phenomenalipid membranesinterface sciencemicroscopic elasticitymembrane biologymembrane sciencemembranesmolecular liquidsbiomolecular engineeringmd part ii

Successful Prediction of Lc8 Binding to Intrinsically Disordered Proteins Sheds Light on Alphafold’s Black Box. Frontiers in Molecular Biosciences (2025)

Thermal Degradation Energy Landscapes of Fluorofentanyls: Probing the Mechanisms and Energetics of Bond Breaking. (2025)

biophysicschemical sciencesbond breakingchemical thermodynamicschemical physicschemical bondmolecular kineticsphysical chemistrychemistryorganic chemistrymolecular structure

Atomically Thin Superfluid and Solid Phases for Atoms on Strained Graphene. Physical review. B./Physical review. B (2024)

Sang Wook KimMohamed Marwan ElsayedNathan S. NicholsTaras LakobaJuan VanegasCarlos WexlerValeri N. KotovAdrian Del Maestro

Mapping the Tension-Gated Transition of the Bacterial Mscs With MD Simulations. Biophysical Journal (2024)

Monica M. Vidal-FrancoAndriy AnishkinSergei I. SukharevJuan M. Vanegas

biophysicscomputational biologymd simulationsbacterial mscscomputational biophysicstension-gated transitionmodeling and simulationbiophysical modeling

Metadynamics Simulations Reveal Mechanisms of Na+ and Ca2+ Transport in Two Open States of the Channelrhodopsin Chimera, C1c2. PLoS ONE (2024)

Lindsey A PrignanoMark J StevensJuan M VanegasSusan B RempeRobert E Dempski

Modeling the Elastic Properties of Soft Materials From Molecular Dynamics Simulations. Biophysical Journal (2024)

Andrew L. LewisBenjamin E. HimbergJuan M. Vanegas

biophysicsphysicsmaterial modelingbiophysical modelingelastic propertiesmolecular dynamics simulationscondensed matter physicsmaterials sciencesoft materials

1
2
3
4
5
13
10 / page

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computational molecular biophysics

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