Faculty

Institution

Unit

Venue

William B. Andreopoulos

San Jose State University

Affiliations

College of Science

Department Of Computer Science

William B. Andreopoulos is a Senior Professor at San Jose State University. His research integrates evolutionary biology, genomics, and molecular evolution, with a specific focus on fungal biology, including the phylogenomics of the Discinaceae family and the ectomycorrhizal basidiomycete *Laccaria bicolor*. His recent work also spans computational biology, employing graph neural networks and AI code generation metrics. He has published in venues such as *Molecular Phylogenetics and Evolution* and *iScience*, with notable contributions on nucleosome positioning in microeukaryotes and high-molecular-weight DNA extraction from macrofungi.

Honors

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William B. Andreopoulos

San Jose State University

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evolutionary biology genomics molecular biology genetics evolutionary ecology genome biology plant science fungal evolution fungal biology ecology molecular evolution fungal ecology botany phylogenetics biotechnology ecology and evolutionary biology systematics ima fungus environmental microbiology comparative genomics biological evolution food mycology phylogenomics mushroom-forming fungi zygomycete secretomes terrestrial fungal ecologies biogeography virus research avian biology adaptation ecology evolution molecular ecology nucleic acids social science research applied microbiology language testing applied linguistics genome analysis plant biology plant genetics plant endophytes plant genomics phycology gene evolution evolutionary genetics yeast speciation genome sequencing evolutionary taxonomies nuclear organization microbial systematics cross-language perspective antimicrobial resistance genes antibiotic resistance evolutionary microbiology pathogen characterization veterinary microbiology fungal systematics dna sequencing dna analysis mushroom evolution genomic analysis agaricales lifestyle evolution peroxidase diversity early evolution diploid-dominant life cycles hyperdiverse lineage evolutionary transition ectomycorrhizal habit adaptive evolution marine fungi genomic characterization marine biomass degradation

Notable Scholarly Works

Notable Federal Grants

Collaborators

Draft Genomes of Geographically Distinct Strains and Progeny of the Ectomycorrhizal Basidiomycete Laccaria Bicolor. Journal of Genomics (2026)

Evaluating AI Code Generation Quality With Software Metrics. SSRN Electronic Journal (2026)

computer sciencesoftware testingsoftware analysissoftware maintenancedata sciencesoftware engineeringprogram analysis

Consecutive Low-Frequency Shifts in a/T Content Denote Nucleosome Positions Across Microeukaryotes. iScience (2025)

biophysicsnucleic acidsnuclear organizationmolecular biologychromatin

Domain-Specific Graph Rag Pipelines: Optimized Approaches for Building Efficient Personal Knowledge Repositories. (2025)

Enhancing Recommender Systems Using Graph Neural Networks, Long Short-Term Memory and Textual Embeddings. (2025)

Methodology for Extracting High-Molecular-Weight Dna From Field Collections of Macrofungi. Journal of Fungi (2025)

fungal systematicsdna sequencingfungusfungal biologygenomicsima fungusmicrobiologybiotechnologybioanalysisfungal geneticsmolecular biologyfungal ecologydna analysisbioinformatics

Phylogenomic Insights Into the Taxonomy, Ecology, and Mating Systems of the Lorchel Family Discinaceae (Pezizales, Ascomycota). Molecular Phylogenetics and Evolution (2025)

Alden C DirksAndrew S MethvenAndrew N MillerMichelle Orozco-QuimeSundy MauriceGregory BonitoJudson Van WykSteven AhrendtAlan KuoWilliam AndreopoulosRobert RileyAnna LipzenMansi ChovatiaEmily SavageKerrie BarryIgor V GrigorievAlexander J BradshawFrancis M MartinA Elizabeth ArnoldTimothy Y James

ecology evolutionphylogenomic insightsmolecular ecologybiologyphylogeneticssystematicslorchel family discinaceaeevolutionary biologymolecular evolutionphylogenomicsevolutionary taxonomies

Real-Time Adaptive Topic Modeling Framework for Identifying Social Engineering Attacks. (2025)

content analysisknowledge discoverysocial mediasocial simulationinterpersonal violencestatisticsinformation securitycomputer securityinformation forensicscommunicationcomputational social sciencedata sciencesecurity studiesviolent behaviorcyber conflicttext miningonline information

Community Detection Using Deep Learning: Combining Variational Graph Autoencoders With Leiden and K-Truss Techniques. Information (2024)

Comparison Between Ribosomal Assembly and Machine Learning Tools for Microbial Identification of Organisms With Different Characteristics. Current Bioinformatics (2024)

microbial systematicsenvironmental microbiologymicrobiologyapplied microbiologybioinformatics

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William B. Andreopoulos

San Jose State University

Affiliations

College of Science

Department Of Computer Science

Honors

Create free account to unlock more features

Experiences

Create free account to unlock more features

Education

Create free account to unlock more features

William B. Andreopoulos

San Jose State University

You can click a keyword to filter the displayed items

Notable Scholarly Works

Notable Federal Grants

Collaborators

Draft Genomes of Geographically Distinct Strains and Progeny of the Ectomycorrhizal Basidiomycete Laccaria Bicolor. Journal of Genomics (2026)

Evaluating AI Code Generation Quality With Software Metrics. SSRN Electronic Journal (2026)

computer sciencesoftware testingsoftware analysissoftware maintenancedata sciencesoftware engineeringprogram analysis

Consecutive Low-Frequency Shifts in a/T Content Denote Nucleosome Positions Across Microeukaryotes. iScience (2025)

biophysicsnucleic acidsnuclear organizationmolecular biologychromatin

Domain-Specific Graph Rag Pipelines: Optimized Approaches for Building Efficient Personal Knowledge Repositories. (2025)

Enhancing Recommender Systems Using Graph Neural Networks, Long Short-Term Memory and Textual Embeddings. (2025)

Methodology for Extracting High-Molecular-Weight Dna From Field Collections of Macrofungi. Journal of Fungi (2025)

fungal systematicsdna sequencingfungusfungal biologygenomicsima fungusmicrobiologybiotechnologybioanalysisfungal geneticsmolecular biologyfungal ecologydna analysisbioinformatics

Phylogenomic Insights Into the Taxonomy, Ecology, and Mating Systems of the Lorchel Family Discinaceae (Pezizales, Ascomycota). Molecular Phylogenetics and Evolution (2025)

ecology evolutionphylogenomic insightsmolecular ecologybiologyphylogeneticssystematicslorchel family discinaceaeevolutionary biologymolecular evolutionphylogenomicsevolutionary taxonomies

Real-Time Adaptive Topic Modeling Framework for Identifying Social Engineering Attacks. (2025)

Community Detection Using Deep Learning: Combining Variational Graph Autoencoders With Leiden and K-Truss Techniques. Information (2024)

Comparison Between Ribosomal Assembly and Machine Learning Tools for Microbial Identification of Organisms With Different Characteristics. Current Bioinformatics (2024)

microbial systematicsenvironmental microbiologymicrobiologyapplied microbiologybioinformatics

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3
4
5
10 / page