Faculty

Institution

Unit

Venue

Shin-Han Shiu

Red Cedar Distinguished Professor

Michigan State University

Affiliations

College of Natural Science

Cell & Molecular Biology Program

Department of Computational Mathematics, Science and Engineering

Department of Plant Biology

Genetics & Genome Sciences

Molecular Plant Sciences Program

College of Engineering

Department of Computational Mathematics, Science and Engineering

Shin-han Shiu is currently serving as a Cell & Molecular Biology Program Red Cedar Distinguished Professor at Michigan State University.

Honors

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Experiences

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Education

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Shin-Han Shiu

Michigan State University

Red Cedar Distinguished Professor

You can click a keyword to filter the displayed items

genetics plant science molecular biology genomics plant physiology plant biology plant genetics evolutionary biology genome biology gene expression botany biology plant genomics molecular evolution bioinformatics plant biotechnology plant molecular biology molecular genetics transcription factors integrative plant biology functional genomics avian biology plant biochemistry gene regulation mammalian biology plant metabolism transcription regulation plant development experimental botany gene evolution rna biology gene function computational genomics arabidopsis thaliana plant cells algal biology experimental plant biology plant diversity comparative genomics evolutionary genetics epigenomics photosynthesis molecular regulation crop physiology vegetation science plant stress duplicate genes liver physiology molecular plant pathology algal research molecular physiology genome sequencing receptor (biochemistry) genome analysis plant ecology plant-abiotic interaction transcriptomics technology lineage-specific expansion comparative transcriptomics plant species genetic redundancy scientific computing adaptation science education e-science science studies monophyletic gene family animal receptor kinases receptor-like kinases receptor-like kinase family receptor-like proteins f-box subunit diverse superfamily transcript abundance environmental stimuli adaptive response

Notable Scholarly Works

Notable Federal Grants

Collaborators

Global Genotype by Environment Prediction Competition Reveals That Diverse Modeling Strategies Can Deliver Satisfactory Maize Yield Estimates. Genetics (2024)

Jacob D WashburnJosé Ignacio VarelaAlencar XavierQiuyue ChenDavid ErtlJoseph L GageJames B HollandDayane Cristina LimaMaria Cinta RomayMarco Lopez-CruzGustavo de los CamposWesley BarberCristiano ZimmerIgnacio Trucillo SilvaFabiani RochaRenaud RincentBaber AliHaixiao HuDaniel E RuncieKirill GusevAndrei SlabodkinPhillip BaxJulie AubertHugo GangloffTristan Mary-HuardTheodore VanrenterghemCarles Quesada-TraverSteven YatesDaniel Ariza-SuárezArgeo UlrichMichele WylerDaniel R KickEmily S BellisJason L CauseyEmilio Soriano ChavezYixing WangVed PiyushGayara D FernandoRobert K HuRachit KumarAnnan J TimonRasika VenkateshKenia Segura AbáHuan ChenThilanka RanaweeraShin-Han ShiuPeiran WangMax J GordonB Kirtley AmosSebastiano BusatoDaniel PerondiAbhishek GognaDennis PsaroudakisChun-Peng James ChenHawlader A Al-MamunMonica F DanileviczShriprabha R UpadhyayaDavid EdwardsNatalia de Leon

global genotypeplant geneticsgeneticscrop yieldsgenetic variation

Impact of Genome Assemblies, Genotyping Methods, Variant Types, Ploidy Levels and Population Structures on Genomic Prediction in Switchgrass. bioRxiv (Cold Spring Harbor Laboratory) (2024)

Peipei WangFanrui MengChristina B Del AzodiKenia Segura AbáMichael D. CaslerShin-Han Shiu

genome assembliesgenomicspopulation structuresgenomic predictiongeneticsploidy levelsvariant types

Machine Learning Reveals Genes Impacting Oxidative Stress Resistance Across Yeasts. bioRxiv (Cold Spring Harbor Laboratory) (2024)

Katarina AranguizLinda C. HorianopoulosLogan ElkinKenia Segura AbáRussell L. WrobelShin-Han ShiuAntonis RokasChris Todd Hittinger

computational genomicsoxidative stress resistancegenomicsmolecular biologyoxidative stresssystems biologygene expressionredox biologybioinformaticsgenetics

Prediction of Plant Complex Traits via Integration of Multi-Omics Data. Nature Communications (2024)

P WangMD Lehti-ShiuS LotreckK Segura AbáPJ KrysanSH Shiu

multi-omics dataplant complex traitsdata scienceplant sciencebioinformatics

Challenges and Opportunities to Build Quantitative Self-Confidence in Biologists. BioScience (2023)

Kim CuddingtonKaren C AbbottFrederick R AdlerMehmet AydenizRene DaleLouis J GrossAlan HastingsElizabeth A HobsonVadim A KaratayevAlexander KillionAasakiran MadamanchiMichelle L MarraffiniAudrey L McCombsWidodo SamyonoShin-Han ShiuKaren H WatanabeEaston R White

environmental sciencequantitative biologybiophysical chemistrybioinformaticsphysiologybiomedical researchcell biologybiologychemical biologymolecular biologycomputational biologyearth sciencebiosystemssystems biologybiophysicsbiostatisticsexperimental biologymathematical biologyintegrative biologyecologyscientific integrity

Plant Science Corpus. Zenodo (CERN European Organization for Nuclear Research) (2023)

Shin-Han Shiu

biologyplant scienceplant biologyplant science corpus

EDITORIAL: Artificial Intelligence and Machine Learning Applications in Plant Genomics and Genetics. Frontiers in Artificial Intelligence (2022)

Aalt D. J. van DijkShin-Han ShiuDick de Ridder

artificial intelligenceplant genomicsgeneticsmachine learning

Evolutionary Analysis of the Lorelei Gene Family in Plants Reveals Regulatory Subfunctionalization. PLANT PHYSIOLOGY (2022)

Jennifer A NobleNicholas V BielskiMing-Che James LiuThomas A DeFalcoMartin StegmannAndrew D L NelsonKara McNamaraBrooke SullivanKhanhlinh K DinhNicholas KhuuSarah HancockShin-Han ShiuCyril ZipfelAlice Y CheungMark A BeilsteinRavishankar Palanivelu

botanyplant biologyevolutionary biologyplant physiologyevolutionary analysis

High‐Throughput Measurement of Plant Fitness Traits With an Object Detection Method Using Faster R‐CNN. New Phytologist (2022)

P WangF MengP DonaldsonS HoranNL PanchyE Vischulis...

vegetation sciencedeep learninghigh-throughput measurementplant fitness traitsobject detectionobject detection methodecologyplant sciencemachine learning

Regulators of Early Maize Leaf Development Inferred From Transcriptomes of Laser Capture Microdissection (Lcm)-Isolated Embryonic Leaf Cells. Proceedings of the National Academy of Sciences (2022)

WY LiuCP YuCK ChangHJ ChenMY LiYH ChenSH ShiuMSB Ku...

embryonic leaf cellsembryologydevelopmental biologyplant biotechnologygeneticscell biologygenomicsplant physiologyexperimental botanyplant genomicsplant cell culturebotanytranscriptomics technologyplant sciencegenome biologylaser capture microdissectionplant developmentplant biologytranscriptome

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Shin-Han Shiu

Red Cedar Distinguished Professor

Michigan State University

Affiliations

College of Natural Science

Cell & Molecular Biology Program

Department of Computational Mathematics, Science and Engineering

Department of Plant Biology

Genetics & Genome Sciences

Molecular Plant Sciences Program

College of Engineering

Department of Computational Mathematics, Science and Engineering

Shin-han Shiu is currently serving as a Cell & Molecular Biology Program Red Cedar Distinguished Professor at Michigan State University.

Honors

Create free account to unlock more features

Experiences

Create free account to unlock more features

Education

Create free account to unlock more features

Shin-Han Shiu

Michigan State University

Red Cedar Distinguished Professor

You can click a keyword to filter the displayed items

Notable Scholarly Works

Notable Federal Grants

Collaborators

Global Genotype by Environment Prediction Competition Reveals That Diverse Modeling Strategies Can Deliver Satisfactory Maize Yield Estimates. Genetics (2024)

global genotypeplant geneticsgeneticscrop yieldsgenetic variation

Impact of Genome Assemblies, Genotyping Methods, Variant Types, Ploidy Levels and Population Structures on Genomic Prediction in Switchgrass. bioRxiv (Cold Spring Harbor Laboratory) (2024)

Peipei WangFanrui MengChristina B Del AzodiKenia Segura AbáMichael D. CaslerShin-Han Shiu

genome assembliesgenomicspopulation structuresgenomic predictiongeneticsploidy levelsvariant types

Machine Learning Reveals Genes Impacting Oxidative Stress Resistance Across Yeasts. bioRxiv (Cold Spring Harbor Laboratory) (2024)

Katarina AranguizLinda C. HorianopoulosLogan ElkinKenia Segura AbáRussell L. WrobelShin-Han ShiuAntonis RokasChris Todd Hittinger

computational genomicsoxidative stress resistancegenomicsmolecular biologyoxidative stresssystems biologygene expressionredox biologybioinformaticsgenetics

Prediction of Plant Complex Traits via Integration of Multi-Omics Data. Nature Communications (2024)

P WangMD Lehti-ShiuS LotreckK Segura AbáPJ KrysanSH Shiu

multi-omics dataplant complex traitsdata scienceplant sciencebioinformatics

Challenges and Opportunities to Build Quantitative Self-Confidence in Biologists. BioScience (2023)

Plant Science Corpus. Zenodo (CERN European Organization for Nuclear Research) (2023)

Shin-Han Shiu

biologyplant scienceplant biologyplant science corpus

EDITORIAL: Artificial Intelligence and Machine Learning Applications in Plant Genomics and Genetics. Frontiers in Artificial Intelligence (2022)

Aalt D. J. van DijkShin-Han ShiuDick de Ridder

artificial intelligenceplant genomicsgeneticsmachine learning

Evolutionary Analysis of the Lorelei Gene Family in Plants Reveals Regulatory Subfunctionalization. PLANT PHYSIOLOGY (2022)

botanyplant biologyevolutionary biologyplant physiologyevolutionary analysis

High‐Throughput Measurement of Plant Fitness Traits With an Object Detection Method Using Faster R‐CNN. New Phytologist (2022)

P WangF MengP DonaldsonS HoranNL PanchyE Vischulis...

vegetation sciencedeep learninghigh-throughput measurementplant fitness traitsobject detectionobject detection methodecologyplant sciencemachine learning

Regulators of Early Maize Leaf Development Inferred From Transcriptomes of Laser Capture Microdissection (Lcm)-Isolated Embryonic Leaf Cells. Proceedings of the National Academy of Sciences (2022)

WY LiuCP YuCK ChangHJ ChenMY LiYH ChenSH ShiuMSB Ku...

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Similar Faculty Members

Aleksandra Skirycz

Institution

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biosynthesis

plant pathology

Neelima R. Sinha

Institution

University of California, Davis

genomics

genetic variation

Robert L Last

Institution

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food system

plant resilience

Erich Grotewold

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Bob Schmitz

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plant genetics

genomics

Michael Thomashow

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applied microbiology

pathogen

Nigel M. Crawford

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experimental plant biology

ecosystem

Julia Bailey-Serres

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University of California, Riverside

plant science

plant physiology

Thomas E Juenger

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evolutionary biology

evolutionary ecology

David Galbraith

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omics datasets

molecular informatics