Faculty

Institution

Unit

Venue

Shibu Yooseph

Claremont McKenna College

Affiliations

Claremont McKenna College

Kravis Department of Integrated Sciences

Robert Day School of Economics and Finance

The Berger Institute for Individual and Social Development

The Keck Center for International and Strategic Studies

The Randall Lewis Center for Innovation and Entrepreneurship

Department Of Government

Department Of Joint Sciences

Department Of Literature

Department Of Political Science

NoneShibu Yooseph is currently serving as a Claremont Mckenna College faculty at Claremont Mckenna College.

Honors

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Experiences

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Education

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Shibu Yooseph

Claremont McKenna College

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microbiology genomics metagenomics microbiome bioinformatics molecular biology genetics marine biology microbial ecology clinical microbiology evolutionary biology genome biology virology computational biology environmental microbiology microbial diversity respiratory medicine biological oceanography medical microbiology applied microbiology bacteriology cancer biology metagenomic data gut microbiome plo biology cell metabolism medicinal research molecular informatics molecular diagnostics molecular ecology scientific data virus research gut microbes marine genomics comparative genomics chromosome biology sequence assembly marine ecology metatranscriptomics protein assembly viral evolution parasite genomics oral microbiology human genome human microbiome microbial community structure homolog search leukemia nucleic acids population genomics host genetics yeast host-parasite relationships cytogenetics tumor suppressors melanoma innate immune system cancer risk long-read sequencing high throughput sequencing pathogen detection detection technique liver disease benchmarking tool profiling tool marine environments eastern tropical pacific protein families feeding pattern diurnal dynamics essential genes minimal bacterium reduced genome epibiotic parasitic lifestyle genomic insights functional adaptation

Notable Scholarly Works

Notable Federal Grants

Collaborators

Bidirectional Subsethood of Shared Marker Profiles Enables Accurate Virus Classification. Microbiome (2025)

biomedical informaticsinfectious diseasesvirologybidirectional subsethoodvirus classificationdata miningdata scienceviral evolutionbioinformaticsvirus research

Evidence for Trace Gas Metabolism and Widespread Antibiotic Synthesis in an Abiotically Driven, Antarctic Soil Ecosystem. Environmental Microbiology Reports (2025)

Model Selection for Sparse Microbial Network Inference Using Variational Approximation. Lecture notes in computer science (2025)

Oral Microbiome Changes During Hospitalization in Older Adults Not Receiving Mechanical Ventilation. American Journal of Critical Care (2025)

dysbiosismicrobiologyhospital infectionsmicrobiomeoral microbiologycritical careinfection control

A Neoteric Antibacterial Ceria-Silver Nanozyme for Abiotic Surfaces. Biomaterials (2024)

Abinaya Sindu PugazhendhiCraig J. NealKhoa Minh TaMarco MolinariUdit KumarFei WeiElayaraja KolanthaiAndrew AdyChristina DrakeMegan HughesShibu YoosephSudipta SealMelanie J. Coathup

nanomaterialsclinical microbiologydrug deliveryabiotic surfacessurface sciencenanomedicinenanotechnologybiomedical engineeringpharmacologyapplied microbiologynanobiotechnologymaterials science

Correction to: Genetic Risk, Dysbiosis, and Treatment Stratification Using Host Genome and Gut Microbiome in Inflammatory Bowel Disease. Clinical and Translational Gastroenterology (2024)

Ahmed MoustafaWeizhong LiEricka L. AndersonEmily H. MWongParambir S. DulaiWilliam J. SandbornWilliam BiggsShibu YoosephMarcus B. JonesCraig J. VenterKaren E. NelsonJohn T. ChangAmalio TelentiBrigid S. Boland

clinical microbiologytreatment stratificationclinical gastroenterologygastroenterologygut microbiomedysbiosisgenetic riskmicrobiologyinflammatory bowel diseasehost genomemicrobiomegenetics

1153: Oral Microbiome Changes Over Time in Hospitalized Older Adults From Skilled Nursing Facility vs Home. Critical Care Medicine (2023)

Kimberly RathbunShibu YoosephRui XieAnnette BourgaultSteven TalbertVictoria LoerzelMary Sole

hospitalized older adultsclinical gerontologynursingmedicinegeriatricselderly caremicrobiomecritical care

Integrated De Novo Gene Prediction and Peptide Assembly of Metagenomic Sequencing Data. NAR Genomics and Bioinformatics (2023)

Sirisha ThippabhotlaBen LiuAdam PodgornyShibu YoosephYoungik YangJun ZhangCuncong Zhong

metagenomic sequencing datametagenomicspeptide assemblymolecular biologymarine biologybioinformatics

Abstract 15391: Transcriptomic Expression Changes in Embryonic Mouse Hearts Following Single-Dose Maternal Binge Alcohol Consumption: Implications for Congenital Heart Defects. Circulation (2022)

Anagha SrivatsaDarya SulkouskayaRichard ShaoJose D AlvarezShreya ChordiyaJesu R ValenciaBrandon LeShibu YoosephPal PacherSteven N Ebert

liver physiologystem cell researchdevelopmental toxicologydevelopmental biologyhuman geneticsgeneticscirculatory physiologyhematologyapplied physiologygene expressionhealth sciencescardiologytranscriptomics technologyrna biologycardiovascular researchembryonic mouse heartstranscriptomic expression changesgene functionchild developmentdevelopmental genetics

De Novo Genome Assembly Highlights the Role of Lineage-Specific Gene Duplications in the Evolution of Venom in Fea's Viper ( Azemiops Feae ). Genome Biology and Evolution (2022)

Edward A MyersJason L StricklandRhett M RautsawAndrew J MasonTristan D SchramerGunnar S NystromMichael P HoganShibu YoosephDarin R RokytaChristopher L Parkinson

lineage-specific gene duplicationsgenome assemblygeneticsevolutionary biologygene evolutionmolecular evolutiongenome biology

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Shibu Yooseph

Claremont McKenna College

Affiliations

Claremont McKenna College

Kravis Department of Integrated Sciences

Robert Day School of Economics and Finance

The Berger Institute for Individual and Social Development

The Keck Center for International and Strategic Studies

The Randall Lewis Center for Innovation and Entrepreneurship

Department Of Government

Department Of Joint Sciences

Department Of Literature

Department Of Political Science

NoneShibu Yooseph is currently serving as a Claremont Mckenna College faculty at Claremont Mckenna College.

Honors

Create free account to unlock more features

Experiences

Create free account to unlock more features

Education

Create free account to unlock more features

Shibu Yooseph

Claremont McKenna College

You can click a keyword to filter the displayed items

Notable Scholarly Works

Notable Federal Grants

Collaborators

Bidirectional Subsethood of Shared Marker Profiles Enables Accurate Virus Classification. Microbiome (2025)

biomedical informaticsinfectious diseasesvirologybidirectional subsethoodvirus classificationdata miningdata scienceviral evolutionbioinformaticsvirus research

Evidence for Trace Gas Metabolism and Widespread Antibiotic Synthesis in an Abiotically Driven, Antarctic Soil Ecosystem. Environmental Microbiology Reports (2025)

Model Selection for Sparse Microbial Network Inference Using Variational Approximation. Lecture notes in computer science (2025)

Oral Microbiome Changes During Hospitalization in Older Adults Not Receiving Mechanical Ventilation. American Journal of Critical Care (2025)

dysbiosismicrobiologyhospital infectionsmicrobiomeoral microbiologycritical careinfection control

A Neoteric Antibacterial Ceria-Silver Nanozyme for Abiotic Surfaces. Biomaterials (2024)

Abinaya Sindu PugazhendhiCraig J. NealKhoa Minh TaMarco MolinariUdit KumarFei WeiElayaraja KolanthaiAndrew AdyChristina DrakeMegan HughesShibu YoosephSudipta SealMelanie J. Coathup

nanomaterialsclinical microbiologydrug deliveryabiotic surfacessurface sciencenanomedicinenanotechnologybiomedical engineeringpharmacologyapplied microbiologynanobiotechnologymaterials science

Correction to: Genetic Risk, Dysbiosis, and Treatment Stratification Using Host Genome and Gut Microbiome in Inflammatory Bowel Disease. Clinical and Translational Gastroenterology (2024)

clinical microbiologytreatment stratificationclinical gastroenterologygastroenterologygut microbiomedysbiosisgenetic riskmicrobiologyinflammatory bowel diseasehost genomemicrobiomegenetics

1153: Oral Microbiome Changes Over Time in Hospitalized Older Adults From Skilled Nursing Facility vs Home. Critical Care Medicine (2023)

Kimberly RathbunShibu YoosephRui XieAnnette BourgaultSteven TalbertVictoria LoerzelMary Sole

hospitalized older adultsclinical gerontologynursingmedicinegeriatricselderly caremicrobiomecritical care

Integrated De Novo Gene Prediction and Peptide Assembly of Metagenomic Sequencing Data. NAR Genomics and Bioinformatics (2023)

Sirisha ThippabhotlaBen LiuAdam PodgornyShibu YoosephYoungik YangJun ZhangCuncong Zhong

metagenomic sequencing datametagenomicspeptide assemblymolecular biologymarine biologybioinformatics

Abstract 15391: Transcriptomic Expression Changes in Embryonic Mouse Hearts Following Single-Dose Maternal Binge Alcohol Consumption: Implications for Congenital Heart Defects. Circulation (2022)

Anagha SrivatsaDarya SulkouskayaRichard ShaoJose D AlvarezShreya ChordiyaJesu R ValenciaBrandon LeShibu YoosephPal PacherSteven N Ebert

De Novo Genome Assembly Highlights the Role of Lineage-Specific Gene Duplications in the Evolution of Venom in Fea's Viper ( Azemiops Feae ). Genome Biology and Evolution (2022)

Edward A MyersJason L StricklandRhett M RautsawAndrew J MasonTristan D SchramerGunnar S NystromMichael P HoganShibu YoosephDarin R RokytaChristopher L Parkinson

lineage-specific gene duplicationsgenome assemblygeneticsevolutionary biologygene evolutionmolecular evolutiongenome biology

1
2
3
4
5
12
10 / page