Faculty

Institution

Unit

Venue

Stephen R Downie

Professor

UIUC

Affiliations

College of Liberal Arts & Sciences

School of Integrative Biology

Department of Plant Biology

Stephen R Downie is currently serving as a College Of Liberal Arts & Sciences Professor at Uiuc.

Honors

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Experiences

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Education

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Stephen R Downie

UIUC

Professor

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biology systematics evolutionary biology phylogenetics plant taxonomy molecular evolution botany evolutionary taxonomies plant science genetics phylogenetic methods phylogeny comparison molecular ecology genomics phylogenomics taxonomy (biology) integrative plant biology biogeography biodiversity systematic palaeontology plant biodiversity plant genetics genome biology phytogeography plant genomics morphology (biology) cladistics ecology plant biology genetic variation plant molecular biology comparative genomics biochemical taxonomy plant diversity systematic entomology phylogenetic analysis paleobotany zoological taxonomy maximum likelihood spacer sequences nuclear ribosomal dna fruit anatomy ecology evolution plant cells nucleic acids fruit morphology molecular systematics molecular plant pathology dna sequences plant biotechnology phytochemical analysis palaeogeography principal component analysis multivariate analysis comparative analysis morphological evidence genetic diversity phytochemistry genome structure restriction sites cpdna sequences major clades genome sequencing dna barcoding internal transcribed spacer new world nrdna its sequences tribe scandiceae inverted repeat region scientific data molecular plant-microbe interactions genome studies neutrino astronomy speciation specie distribution plant-insect interactions systematics (systems theory)

Notable Scholarly Works

Notable Federal Grants

Collaborators

Phylogenomic Analysis of the East Asia Clade (Apiaceae Subfamily Apioideae) Supports Its Integration Into Komarovieae and Prompts Taxonomic Revisions. Plant Diversity (2025)

Stephen R Downie

phylogeneticsphylogeny comparisonphylogenomic analysistaxonomy (biology)biologysystematicsmolecular ecologyplant taxonomyphylogenetic methodsprompts taxonomic revisionsmolecular evolutioneast asia cladeevolutionary taxonomiesevolutionary biology

Phylogenomics and the Rise of the Angiosperms. Nature (2024)

Alexandre R. ZuntiniTom CarruthersOlivier MaurinPaul C. BaileyKevin LeempoelGrace E. BrewerNiroshini EpitawalageElaine FrançosoBerta Gallego-ParamoCatherine McGinnieRaquel NegrãoShyamali R. RoyLalita SimpsonEduardo Toledo RomeroVanessa M. A. BarberLaura BotiguéJames J. ClarksonRobyn S. CowanSteven DodsworthMatthew G. JohnsonJan T. KimLisa PokornyNorman J. WickettGuilherme M. AntarLucinda DeBoltKarime GutierrezKasper P. HendriksAlina HoewenerAi-Qun HuElizabeth M. JoyceIzai A. B. S. KikuchiIsabel LarridonDrew A. LarsonElton John de LírioJing-Xia LiuPanagiota MalakasiNatalia A. S. PrzelomskaToral ShahJuan ViruelTheodore R. AllnuttGabriel K. AmekaRose L. AndrewMarc S. AppelhansMontserrat AristaMaría Jesús ArizaJuan ArroyoWatchara ArthanJulien B. BachelierC. Donovan BaileyHelen F. BarnesMatthew D. BarrettRussell L. BarrettRandall J. BayerMichael J. BaylyEd BiffinNicky BiggsJoanne L. BirchDiego BogarínRenata BorosovaAlexander M. C. BowlesPeter C. BoyceGemma L. C. BramleyMarie BriggsLinda BroadhurstGillian K. BrownJeremy J. BruhlAnne BruneauSven BuerkiEdie BurnsMargaret ByrneStuart CableAinsley CalladineMartin W. CallmanderÁngela CanoDavid J. CantrillWarren M. Cardinal-McTeagueMónica M. CarlsenAbigail J. A. CarruthersAlejandra de Castro MateoMark W. ChaseLars W. ChatrouMartin CheekShilin ChenMaarten J. M. ChristenhuszPascal-Antoine ChristinMark A. ClementsSkye C. CoffeyJohn G. ConranXavier CornejoThomas L. P. CouvreurIan D. CowieLaszlo CsibaIain DarbyshireGerrit DavidseNina M. J. DaviesAaron P. DavisKor-jent van DijkStephen R. DownieMarco F. DurettoMelvin R. Duvall

phylogeneticsphylogeny comparisonexplosive diversificationbiologysystematicssteady diversificationmolecular ecologygene tree conflictphylogenomicsmolecular evolutionevolutionary taxonomiesevolutionary biology

Circumscription of the East Asia Clade (Apiaceae Subfamily Apioideae) and the Taxonomic Placements of Several Problematic Genera. Plant Diversity (2023)

Jing ZhouXinyue WangShilin ZhouJunmei NiuJiarui YueZhenwen LiuStephen R. Downie

phylogeneticsphylogeny comparisonseveral problematic generataxonomy (biology)biodiversitybiogeographybiologysystematicsmolecular ecologyplant taxonomyphylogenetic methodseast asiamolecular evolutioneast asia cladeevolutionary taxonomiesevolutionary biology

A Higher-Level Nuclear Phylogenomic Study of the Carrot Family (Apiaceae). Zenodo (CERN European Organization for Nuclear Research) (2022)

James J. ClarksonAlexandre R. ZuntiniOlivier MaurinStephen DownieGregory M. PlunkettAntoine N. NicolasJames F. SmithMary Ann E. FeistKarime GutierrezPaul BaileyGrace E. BrewerNiroshini EpitawalageSue ZmarztyFélix ForestWilliam J. Baker

genomicsphylogeneticspoor-quality herbarium specimensnuclear genesplant geneticsgeneticsbiologysystematicsintegrative plant biologyplant taxonomymolecular evolutionplant sciencebotanycarrot familyplant genomicsevolutionary biology

Discovering Content Through Text Mining for a Synthetic Biology Knowledge System. ACS Synthetic Biology (2022)

Bridget T. McInnesJ. Stephen DownieYikai HaoJacob JettKevin KeatingGaurav NakumSudhanshu RanjanNicholas E. RodriguezJiawei TangDu XiangEric M. YoungMai H. Nguyen

relationship extractionbiomedical informaticsknowledge extractiontext miningsystems biologytopic modelinginformation extractionbiomedical ontologiesentity recognitionbiomedical text miningknowledge-based systemsnatural language processingknowledge discoverydata sciencecomputational biologysynthetic biologybioinformatics

The Chloroplast Genomes of Sanicula (Apiaceae): Plastome Structure, Comparative Analyses and Phylogenetic Relationships. Nordic Journal of Botany (2022)

Chen YangXue‐Ying YaoZhi‐Xiang ChenStephen R. DownieQi‐Zhi Wang

genomicsphylogeneticsgenome biologyplastome structuresanicula speciesgeneticsbiologysystematicsplant taxonomysanicula orthacanthaphylogenomicsmolecular evolutionbotanycomparative genomicsplant genomics

Diversification in the Perennial Endemic North American Clade of Apiaceae – How Far Are We From Completion?. Botany 2021 Meetings (2021)

Stephen R Downie

phylogeneticsplant biodiversitybiodiversityplant diversitybiogeographybiologysystematicsmolecular ecologyphytogeographyplant taxonomyapiaceae – howecology and evolutionary biologyecologyplant sciencebotanyevolutionary biology

Resolving Species Boundaries in a Recent Radiation With the Angiosperms353 Probe Set: The Lomatium Packardiae/L. Anomalum Clade of the L. Triternatum (Apiaceae) Complex. American Journal of Botany (2021)

Michael V. OttenlipsDonald H. MansfieldSven BuerkiMary Ann E. FeistStephen R. DownieSteven DodsworthFélix ForestGregory M. PlunkettJames F. Smith

genomicsphylogeneticsgenome biologyphylogeny comparisonspecies boundariesrecent radiationgeneticsevolutionary biologybiologysystematicsmolecular ecologyphylogenetic methodsangiosperms353 probe setphylogenomicsmolecular evolutionpopulation genetics

Resolving Species Boundaries With the Angiosperms353 Probe Set in a Recent Radiation: The Lomatium Packardiae/L.Anomalum Clade of the L. Triternatum (Apiaceae) Complex. American Journal of Botany (2021)

Stephen R Downie

phylogeneticsrecent radiationspecies boundariestaxonomy (biology)plant biodiversitybiodiversityangiosperms353 probebiologysystematicsmolecular evolutionplant scienceevolutionary biology

Systematics of the Iranian Genera Aphanopleura, Demavendia, Haussknechtia, Psammogeton, and Zeravschania (Apiaceae Tribe Pimpinelleae). Plant Systematics and Evolution (2021)

Sabereh S. MousaviValiollah MozaffarianKlaus MummenhoffStephen R. DownieShahin Zarre

phylogeneticssystematic entomologytaxonomy (biology)iranian genera aphanopleuraapiaceae tribe pimpinelleaepaleobotanysystematicsplant taxonomyphytogeographybotany

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Stephen R Downie

Professor

UIUC

Affiliations

College of Liberal Arts & Sciences

School of Integrative Biology

Department of Plant Biology

Stephen R Downie is currently serving as a College Of Liberal Arts & Sciences Professor at Uiuc.

Honors

Create free account to unlock more features

Experiences

Create free account to unlock more features

Education

Create free account to unlock more features

Stephen R Downie

UIUC

Professor

You can click a keyword to filter the displayed items

Notable Scholarly Works

Notable Federal Grants

Collaborators

Phylogenomic Analysis of the East Asia Clade (Apiaceae Subfamily Apioideae) Supports Its Integration Into Komarovieae and Prompts Taxonomic Revisions. Plant Diversity (2025)

Stephen R Downie

Phylogenomics and the Rise of the Angiosperms. Nature (2024)

Circumscription of the East Asia Clade (Apiaceae Subfamily Apioideae) and the Taxonomic Placements of Several Problematic Genera. Plant Diversity (2023)

Jing ZhouXinyue WangShilin ZhouJunmei NiuJiarui YueZhenwen LiuStephen R. Downie

A Higher-Level Nuclear Phylogenomic Study of the Carrot Family (Apiaceae). Zenodo (CERN European Organization for Nuclear Research) (2022)

Discovering Content Through Text Mining for a Synthetic Biology Knowledge System. ACS Synthetic Biology (2022)

Bridget T. McInnesJ. Stephen DownieYikai HaoJacob JettKevin KeatingGaurav NakumSudhanshu RanjanNicholas E. RodriguezJiawei TangDu XiangEric M. YoungMai H. Nguyen

The Chloroplast Genomes of Sanicula (Apiaceae): Plastome Structure, Comparative Analyses and Phylogenetic Relationships. Nordic Journal of Botany (2022)

Chen YangXue‐Ying YaoZhi‐Xiang ChenStephen R. DownieQi‐Zhi Wang

Diversification in the Perennial Endemic North American Clade of Apiaceae – How Far Are We From Completion?. Botany 2021 Meetings (2021)

Stephen R Downie

Michael V. OttenlipsDonald H. MansfieldSven BuerkiMary Ann E. FeistStephen R. DownieSteven DodsworthFélix ForestGregory M. PlunkettJames F. Smith

Stephen R Downie

phylogeneticsrecent radiationspecies boundariestaxonomy (biology)plant biodiversitybiodiversityangiosperms353 probebiologysystematicsmolecular evolutionplant scienceevolutionary biology

Systematics of the Iranian Genera Aphanopleura, Demavendia, Haussknechtia, Psammogeton, and Zeravschania (Apiaceae Tribe Pimpinelleae). Plant Systematics and Evolution (2021)

Sabereh S. MousaviValiollah MozaffarianKlaus MummenhoffStephen R. DownieShahin Zarre

phylogeneticssystematic entomologytaxonomy (biology)iranian genera aphanopleuraapiaceae tribe pimpinelleaepaleobotanysystematicsplant taxonomyphytogeographybotany

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