Faculty

Institution

Unit

Venue

Remo Rohs

Professor of Biological Sciences Chemistry Physics and Astronomy and Computer Science

University of Southern California

Affiliations

College of Letters, Arts and Sciences

Natural Sciences

Quantitative and Computational Biology

School of Engineering

Thomas Lord Department of Computer Science

Remo Rohs is currently serving as a College Of Letters, Arts And Sciences Professor of Biological Sciences Chemistry Physics and Astronomy and Computer Science at University of Southern California.

Honors

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Experiences

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Education

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Remo Rohs

University of Southern California

Professor of Biological Sciences Chemistry Physics and Astronomy and Computer Science

You can click a keyword to filter the displayed items

molecular biology genetics structural biology nucleic acids genome biology bioinformatics biophysics biomolecular structure genomics transcription factors structural molecular biology molecular genetics protein science gene expression epigenetics biochemistry molecular cell biology transcription regulation molecular biophysics molecular informatics structural bioinformatics dna shape molecular structure gene regulation dna analysis molecular science insect molecular biology epigenomics rna biology protein-dna recognition molecular regulation bioinformatics database methylene blue binding genome structure epigenetic changes gene structure crispr protein-dna binding molecular cancer avian biology cancer genomics dna sequencing chromosome biology cancer genetics sequence motif yeast protein bioinformatics dna sequence dna shape features mammalian biology stem cell research sequence analysis structural genomics genomic scale transcription factor binding monte carlo simulations cheminformatics biomolecules molecular recognition cytogenetics sequence alignment protein genetics gene function cell regulation chec-seq kinetics core binding site muscle stem-cell ageing epigenetic stress responses motif database cytosine methylation dna-protein complexes protein function signal recognition cellular biology molecular diversity transcriptomics technology biomedical informatics systems biology gene recognition computational biology

Video Presentations

Notable Scholarly Works

Notable Federal Grants

Collaborators

Deep Dnashape Webserver: Prediction and Real-Time Visualization of Dna Shape Considering Extended K -Mers. Nucleic Acids Research (2024)

Jinsen LiRemo Rohs

geneticsdeep learningbioinformaticsmachine learningdna shapedeep dnashape webservernucleic acidsreal-time visualization

DNAPRODB: An Updated Database for the Automated and Interactive Analysis of Protein–Dna Complexes. Nucleic Acids Research (2024)

Raktim MitraAri S CohenJared M SagendorfHelen M BermanRemo Rohs

protein scienceprotein-dna complexesbioinformaticsproteomicsmolecular informaticsbiomolecular engineeringprotein bioinformaticsstructural biologyproteome researchprotein structurestructural molecular biologyupdated databasepathway analysisfunctional genomicsbioinformatics databaseautomated analysisnucleic acidsmolecular biologysystems biologyinteractive analysisstructural bioinformatics

Dna Sequence and Chromatin Differentiate Sequence-Specific Transcription Factor Binding in the Human Malaria Parasite Plasmodium Falciparum. Nucleic Acids Research (2024)

Victoria A BonnellYuning ZhangAlan S BrownJohn HortonGabrielle A JoslingTsu-Pei ChiuRemo RohsShaun MahonyRaluca GordânManuel Llinás

geneticsmalariamolecular geneticsbioinformaticsinfectious diseasesdna sequencetranscription factorsnucleic acidsmolecular biologyparasitologygenome biologystructural molecular biologyhost geneticsparasite genomicsdna sequencingsequence analysishost-parasite relationships

Geometric Deep Learning of Protein–Dna Binding Specificity. Nature Methods (2024)

Raktim MitraJinsen LiJared M. SagendorfYibei JiangAri S. CohenTsu-Pei ChiuCameron J. GlasscockRemo Rohs

geometric deep learningdeep learningrna biologymachine learningcomputational biologyprotein scienceprotein-dna binding specificitybioinformaticsbiomolecular structuremolecular informaticsbiomolecular engineeringprotein bioinformaticsmachine learning researchstructural biologygeometric learningstructural molecular biologyprotein modelingmolecular biologysystems biologystructural bioinformatics

Predicting Dna Structure Using a Deep Learning Method. Nature Communications (2024)

Jinsen LiTsu-Pei ChiuRemo Rohs

geneticsdeep learningbioinformaticsgenomicsstructural biologydeep learning methodmolecular biologydna structure

Processed Data of"Predicting Dna Structure Using a Deep Learning Method". Zenodo (CERN European Organization for Nuclear Research) (2024)

Jinsen LiTsu-Pei ChiuRemo Rohs

geneticsdeep learningbioinformaticsgenomicsdeep learning methoddata sciencenuclear sciencemolecular biologydna structure

RNASCAPE: Geometric Mapping and Customizable Visualization of Rna Structure. Nucleic Acids Research (2024)

Raktim MitraAri S CohenRemo Rohs

bioinformaticscustomizable visualizationnucleic acidsmolecular biologyrna structurevisualizationgeometric mapping

Structure-Based Drug Design With a Deep Hierarchical Generative Model. Journal of Chemical Information and Modeling (2024)

Jesse A. WellerRemo Rohs

chemical structuremolecular modelsbiomolecular structuremolecular informaticsmolecular designmolecular structurebiomolecular engineeringpeptide engineeringstructural biologypharmaceutical researchmolecular modellingstructural molecular biologycheminformaticsdrug discoverystructure-based drug designpharmaceutical chemistrymolecular biologysystems biologyrational drug design

Structure-Based Prediction of Protein-Nucleic Acid Binding Using Graph Neural Networks. Biophysical Reviews (2024)

Jared M. SagendorfRaktim MitraJiawei HuangXiaojiang S. ChenRemo Rohs

structure-based predictionbioinformaticsbiophysicsstructural biologycomputational biophysicsmolecular biologymolecular biophysics

Targeting Circadian Transcriptional Programs Through a Cis-Regulatory Mechanism in Triple Negative Breast Cancer. bioRxiv (Cold Spring Harbor Laboratory) (2024)

Yuanzhong PanTsu-Pei ChiuLili ZhouPriscilla ChanTia Tyrsett KuoFrancesca BattaglinShivani SoniPriya JayachandranJingyi Jessica LiHeinz-Josef LenzShannon M. MumenthalerRemo RohsEvanthia Roussos TorresSteve A. Kay

biochemistrymolecular and cellular biologycancer biologycancer researchmolecular physiologytumor biologymolecular cell biologybreast cancerbreast oncologyoncologycancer geneticsmammalian biologymolecular regulationoncogenescircadian transcriptional programsmolecular biologysystems biologycis-regulatory mechanismtranscription regulation

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Remo Rohs

Professor of Biological Sciences Chemistry Physics and Astronomy and Computer Science

University of Southern California

Affiliations

College of Letters, Arts and Sciences

Natural Sciences

Quantitative and Computational Biology

School of Engineering

Thomas Lord Department of Computer Science

Remo Rohs is currently serving as a College Of Letters, Arts And Sciences Professor of Biological Sciences Chemistry Physics and Astronomy and Computer Science at University of Southern California.

Honors

Create free account to unlock more features

Experiences

Create free account to unlock more features

Education

Create free account to unlock more features

Remo Rohs

University of Southern California

Professor of Biological Sciences Chemistry Physics and Astronomy and Computer Science

You can click a keyword to filter the displayed items

Video Presentations

Notable Scholarly Works

Notable Federal Grants

Collaborators

Deep Dnashape Webserver: Prediction and Real-Time Visualization of Dna Shape Considering Extended K -Mers. Nucleic Acids Research (2024)

Jinsen LiRemo Rohs

geneticsdeep learningbioinformaticsmachine learningdna shapedeep dnashape webservernucleic acidsreal-time visualization

DNAPRODB: An Updated Database for the Automated and Interactive Analysis of Protein–Dna Complexes. Nucleic Acids Research (2024)

Raktim MitraAri S CohenJared M SagendorfHelen M BermanRemo Rohs

Dna Sequence and Chromatin Differentiate Sequence-Specific Transcription Factor Binding in the Human Malaria Parasite Plasmodium Falciparum. Nucleic Acids Research (2024)

Victoria A BonnellYuning ZhangAlan S BrownJohn HortonGabrielle A JoslingTsu-Pei ChiuRemo RohsShaun MahonyRaluca GordânManuel Llinás

Geometric Deep Learning of Protein–Dna Binding Specificity. Nature Methods (2024)

Raktim MitraJinsen LiJared M. SagendorfYibei JiangAri S. CohenTsu-Pei ChiuCameron J. GlasscockRemo Rohs

Predicting Dna Structure Using a Deep Learning Method. Nature Communications (2024)

Jinsen LiTsu-Pei ChiuRemo Rohs

geneticsdeep learningbioinformaticsgenomicsstructural biologydeep learning methodmolecular biologydna structure

Processed Data of"Predicting Dna Structure Using a Deep Learning Method". Zenodo (CERN European Organization for Nuclear Research) (2024)

Jinsen LiTsu-Pei ChiuRemo Rohs

geneticsdeep learningbioinformaticsgenomicsdeep learning methoddata sciencenuclear sciencemolecular biologydna structure

RNASCAPE: Geometric Mapping and Customizable Visualization of Rna Structure. Nucleic Acids Research (2024)

Raktim MitraAri S CohenRemo Rohs

bioinformaticscustomizable visualizationnucleic acidsmolecular biologyrna structurevisualizationgeometric mapping

Structure-Based Drug Design With a Deep Hierarchical Generative Model. Journal of Chemical Information and Modeling (2024)

Jesse A. WellerRemo Rohs

Structure-Based Prediction of Protein-Nucleic Acid Binding Using Graph Neural Networks. Biophysical Reviews (2024)

Jared M. SagendorfRaktim MitraJiawei HuangXiaojiang S. ChenRemo Rohs

structure-based predictionbioinformaticsbiophysicsstructural biologycomputational biophysicsmolecular biologymolecular biophysics

Targeting Circadian Transcriptional Programs Through a Cis-Regulatory Mechanism in Triple Negative Breast Cancer. bioRxiv (Cold Spring Harbor Laboratory) (2024)

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molecular pathway

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rna structure prediction

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mutagenesis (molecular biology technique)

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