Faculty

Institution

Unit

Venue

Paul Nerenberg

Claremont McKenna College

Affiliations

Claremont McKenna College

Kravis Department of Integrated Sciences

Robert Day School of Economics and Finance

The Berger Institute for Individual and Social Development

The Keck Center for International and Strategic Studies

The Randall Lewis Center for Innovation and Entrepreneurship

Department Of Government

Department Of Joint Sciences

Department Of Literature

NonePaul Nerenberg is currently serving as a Claremont Mckenna College faculty at Claremont Mckenna College.

Honors

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Experiences

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Education

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Paul Nerenberg

Claremont McKenna College

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biophysics protein science structural biology biochemistry molecular biology protein structure materials science physical chemistry computational biophysics structural molecular biology protein assembly computational chemistry molecular modelling biological chemistry biomolecular structure numerical simulations surface tension protein chemistry epigenetic changes biomolecular interactions experimental biophysics systematic optimization communications systems biomechanics chemical biology theoretical biology higher education molecular physiology biological macromolecules molecular informatics nucleic acids genome biology molecular cell biology biochemical sciences quantum chemistry computational physics electronic structure chromatin remodeling multi-protein assembly biomolecular analysis molecular recognition molecular docking protein bioinformatics biophysical modeling protein phosphorylation dynamic nuclear polarization chemical probes single-molecule detection single molecule biophysics electrostatic potential charges biomolecular simulations force fields protein-solvent force fields intrinsic conformational preferences model peptides solvation free energies amyloid-b peptides water models disordered structural ensembles electronic structure methods heterogeneous membranes cholesterol asymmetries building capacity undergraduate education

Notable Scholarly Works

Notable Federal Grants

Collaborators

Calculation of Protein-Ligand Binding Entropies Using a Rule-Based Molecular Fingerprint. Biophysical Journal (2024)

biomolecular analysisbiological macromoleculescomputational biologyprotein sciencebiomolecular structuremolecular recognitionrule-based molecular fingerprintmolecular dockingbiochemistrymolecular biophysicsmolecular informaticsmolecular biologybiological chemistryprotein structureprotein bioinformaticsstructural molecular biologybioinformatics

Correction to Development and Validation of Amber-Fb15-Compatible Force Field Parameters for Phosphorylated Amino Acids. The Journal of Physical Chemistry B (2022)

John P. StoppelmanTracey T. NgPaul S. NerenbergLee-Ping Wang

biophysicsprotein phosphorylationprotein sciencephysical chemistryexperimental biophysicsprotein structurephosphorylated amino acidsapplied physicsstructural biologymaterials science

Unraveling Complex Local Protein Environments With 4-Cyano- L -Phenylalanine. The Journal of Physical Chemistry B (2022)

protein sciencebiomolecular structureprotein foldingbiochemistryprotein assemblymolecular biologyprotein structurebiomolecular interactionsmulti-protein assemblystructural molecular biologystructural biology

Building Capacity for Undergraduate Education and Training in Computational Molecular Science: A Collaboration Between the Mercury Consortium and the Molecular Sciences Software Institute. International Journal of Quantum Chemistry (2020)

Ashley Ringer McDonaldJessica A. NashPaul S. NerenbergK. Aurelia BallOlaseni SodeJonathon J. FoleyTheresa L. WindusT. Daniel Crawford

building capacityundergraduate educationengineeringhigher educationcomputational molecular science

Non-Bonded Force Field Model With Advanced Restrained Electrostatic Potential Charges (Resp2). Communications Chemistry (2020)

Michael SchauperlPaul S. NerenbergHyesu JangLee-Ping WangChristopher I. BaylyDavid L. MobleyMichael K. Gilson

communications systemselectrostatic potential chargescommunicationapplied physicsmaterials science

Phosphoserine Inhibits Neighboring Arginine Methylation in the Rks Motif of Histone H3. Archives of Biochemistry and Biophysics (2020)

molecular and cellular biologychromatin remodelingrks motifhistone h3epigenetic changesepigeneticscell biologybiochemistrymolecular physiologymolecular biologychromatinbiological chemistrysignal transductionarginine methylation

Systematic Optimization of Atomistic Water Models for Molecular Simulation Using Liquid/Vapor Surface Tension Data. Bulletin of the American Physical Society (2020)

Lee-Ping WangYudong QiuTeresa Head-GordonPaul Nerenberg

biophysicssystematic optimizationnumerical simulationssurface tensionsurface sciencefluid dynamicsmolecular simulationcomputational biophysicsatomistic water modelsapplied physicscondensed matter physicsmaterials science

Unraveling Complex Protein Environments in Green Fluorescent Protein Using the Unnatural Amino Acid 4-Cyano-L-Phenylalanine. Biophysical Journal (2020)

protein structureunnatural amino acidstructural molecular biologygreen fluorescent proteinprotein chemistryprotein scienceprotein designbiochemistrypeptidescomplex protein environmentsprotein engineeringmolecular biologychemical probesprotein foldingbiomolecular interactionsfluorescenceprotein assembly

Using Molecular Dynamics Simulations to Understand Ir Spectroscopy Results in Green Fluorescent Protein. Biophysical Journal (2020)

biophysicssingle-molecule detectiongreen fluorescent proteinvibrational spectroscopyprotein sciencemolecular modellingmolecular dynamics simulationsbiochemistrymolecular biophysicscomputational biophysicsmolecular biologysingle molecule biophysicsfluorescence

Benchmarking Electronic Structure Methods for Accurate Fixed-Charge Electrostatic Models. Journal of Chemical Information and Modeling (2019)

Alex ZhouMichael SchauperlPaul S. Nerenberg

electronic structure methodschemistrydensity functional theoryelectronic structure

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Paul Nerenberg

Claremont McKenna College

Affiliations

Claremont McKenna College

Kravis Department of Integrated Sciences

Robert Day School of Economics and Finance

The Berger Institute for Individual and Social Development

The Keck Center for International and Strategic Studies

The Randall Lewis Center for Innovation and Entrepreneurship

Department Of Government

Department Of Joint Sciences

Department Of Literature

NonePaul Nerenberg is currently serving as a Claremont Mckenna College faculty at Claremont Mckenna College.

Honors

Create free account to unlock more features

Experiences

Create free account to unlock more features

Education

Create free account to unlock more features

Paul Nerenberg

Claremont McKenna College

You can click a keyword to filter the displayed items

Notable Scholarly Works

Notable Federal Grants

Collaborators

Calculation of Protein-Ligand Binding Entropies Using a Rule-Based Molecular Fingerprint. Biophysical Journal (2024)

Correction to Development and Validation of Amber-Fb15-Compatible Force Field Parameters for Phosphorylated Amino Acids. The Journal of Physical Chemistry B (2022)

John P. StoppelmanTracey T. NgPaul S. NerenbergLee-Ping Wang

biophysicsprotein phosphorylationprotein sciencephysical chemistryexperimental biophysicsprotein structurephosphorylated amino acidsapplied physicsstructural biologymaterials science

Unraveling Complex Local Protein Environments With 4-Cyano- L -Phenylalanine. The Journal of Physical Chemistry B (2022)

Ashley Ringer McDonaldJessica A. NashPaul S. NerenbergK. Aurelia BallOlaseni SodeJonathon J. FoleyTheresa L. WindusT. Daniel Crawford

building capacityundergraduate educationengineeringhigher educationcomputational molecular science

Non-Bonded Force Field Model With Advanced Restrained Electrostatic Potential Charges (Resp2). Communications Chemistry (2020)

Michael SchauperlPaul S. NerenbergHyesu JangLee-Ping WangChristopher I. BaylyDavid L. MobleyMichael K. Gilson

communications systemselectrostatic potential chargescommunicationapplied physicsmaterials science

Phosphoserine Inhibits Neighboring Arginine Methylation in the Rks Motif of Histone H3. Archives of Biochemistry and Biophysics (2020)

Systematic Optimization of Atomistic Water Models for Molecular Simulation Using Liquid/Vapor Surface Tension Data. Bulletin of the American Physical Society (2020)

Lee-Ping WangYudong QiuTeresa Head-GordonPaul Nerenberg

Unraveling Complex Protein Environments in Green Fluorescent Protein Using the Unnatural Amino Acid 4-Cyano-L-Phenylalanine. Biophysical Journal (2020)

Using Molecular Dynamics Simulations to Understand Ir Spectroscopy Results in Green Fluorescent Protein. Biophysical Journal (2020)

Benchmarking Electronic Structure Methods for Accurate Fixed-Charge Electrostatic Models. Journal of Chemical Information and Modeling (2019)

Alex ZhouMichael SchauperlPaul S. Nerenberg

electronic structure methodschemistrydensity functional theoryelectronic structure

1
2
3
10 / page