Faculty

Institution

Unit

Venue

Molly Megraw

Associate Professor

Oregon State University

Affiliations

College of Engineering

Chemical, Biological, and Environmental Engineering

College of Agricultural Sciences

Department of Botany and Plant Pathology

Molly Megraw is currently serving as a Chemical, Biological, And Environmental Engineering Associate Professor at Oregon State University.

Honors

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Experiences

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Education

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Molly Megraw

Oregon State University

Associate Professor

You can click a keyword to filter the displayed items

genetics gene expression molecular biology bioinformatics genomics genome biology plant science microrna detection functional genomics plant physiology non-coding rna small rna molecular cell biology plant biology rna biology epigenetics botany computational biology plant genomics developmental biology plant biotechnology plant genetics molecular genetics nucleic acids transcription regulation molecular informatics environmental science biomedical informatics gene regulation cancer genomics plant molecular biology agricultural biotechnology oncogenes molecular diagnostics horticulture research gynecologic oncology epigenomics bioinformatics database transcriptomics technology cancer biology gene regulatory networks developmental science molecular cancer root morphology plant breeding gene function plant reproduction microrna expression arabidopsis root paired-end analysis obstetrics and gynaecology gene sequence annotation gene editing molecular virology viral genetics rna processing root systems protein expression chronobiology cryptochromes plant development developmental genetics ripening human cancer mammalian microrna targets present computational approaches mirna deregulation mirna microarray animal mirna targets mirna function animal mirnas alternative splicing protein expression landscape microrna genomic information circadian transcripts plant-specific promoter signatures synthetic plant biology systems biology biology integrative plant biology plant natural products machine learning synthetic biology

Notable Scholarly Works

Notable Federal Grants

Collaborators

Comparative Analysis of Salinity Response Transcriptomes in Salt-Tolerant Pokkali and Susceptible Ir29 Rice. bioRxiv (Cold Spring Harbor Laboratory) (2023)

Matthew GenizaSamuel E. FoxAbigail SageMitra AnsariolaMolly MegrawPankaj Jaiswal

biostatisticsplant biotechnologyplant genomicsgenomicsenvironmental sciencecrop physiologyagricultural biotechnologysalinity response transcriptomessalt-tolerant pokkaliplant physiologyplant sciencemicrobial ecologyenvironmental microbiologytranscriptomegenetics

Quality Control and Evaluation of Plant Epigenomics Data. The Plant Cell (2021)

Robert J SchmitzAlexandre P MarandXuan ZhangRebecca A MosherFranziska TurckXuemei ChenMichael J AxtellXuehua ZhongSiobhan M BradyMolly MegrawBlake C Meyers

environmental scienceepigenomicsplant biologyplant epigenomics dataplant science

Accurate Transcription Start Sites Enable Mining for the Cis-Regulatory Determinants of Tissue Specific Gene Expression. bioRxiv (Cold Spring Harbor Laboratory) (2020)

Mitra AnsariolaValerie N. FraserSergei A. FilichkinMaria G. IvanchenkoZachary A. BrightRussell A. GouldOlivia R. OzgucShawn T. O’NeilMolly Megraw

computational genomicsbiomarker discoverycis-regulatory determinantsknowledge discoverysequence analysisgenomicsfunctional genomicsmachine learninggenome biologytranscription regulationmolecular biologysystems biologytranscriptomics technologygene expressionbioinformaticsgenetics

Metabolomics Analysis Reveals Both Plant Variety and Choice of Hormone Treatment Modulate Vinca Alkaloid Production in Catharanthus Roseus. Plant Direct (2020)

Valerie N. FraserBenjamin PhilmusMolly Megraw

plant varietyenvironmental sciencebotanymetabolomicsplant biologyplant physiologyplant science

Rna-Seq Analysis of Genes Affected by Cyclophilin a/Diageotropica (Dgt) in Tomato Root Development. F1000Research (2020)

Maria G. IvanchenkoOlivia R. OzgucStephanie R. BollmannValerie N. FraserMolly Megraw

embryologyplant geneticsdevelopmental biologyagricultural biotechnologyplant biotechnologybioinformaticsgeneticscytogeneticsgenomicsmolecular biologygene expressionplant genomicsrna-seq analysistranscriptomics technologyplant sciencerna biologygenome biologytomato root developmenthorticulture research

Plantsimlab - a Modeling and Simulation Web Tool for Plant Biologists. BMC Bioinformatics (2019)

S. HaE. DimitrovaS. HoopsD. AltarawyM. AnsariolaD. DebJ. GlazebrookR. HillmerH. ShahinF. KatagiriJ. McDowellM. MegrawJ. SetubalB. M. TylerR. Laubenbacher

computer scienceplant biologistsweb-based simulationmodeling toolsplant biologymodeling and simulationbioinformaticssimulation web tool

CONVMD: Convolutive Matrix Decomposition for Classification of Matrix Data. (2018)

Phung LaiRaviv RaichMolly Megraw

data classificationclassification methodmatrix dataconvolutive matrix decompositionbiometricsdata sciencemachine learning

Identification of Transcription Factors From Nf-Y, Nac, and Spl Families Responding to Osmotic Stress in Multiple Tomato Varieties. Plant Science (2018)

Sergei A. FilichkinMitra AnsariolaValerie N. FraserMolly Megraw

osmotic stressplant geneticsplant breedingmolecular geneticsagricultural biotechnologyplant biotechnologygeneticsepigeneticsgenomicsmolecular biologyplant physiologygene expressionbiochemistrybotanyplant stressplant scienceplant biologymultiple tomato varietieshorticulture research

Nanocage-XL: An Approach to High-Confidence Transcription Start Site Sequencing. Methods in molecular biology (2018)

Maria G. IvanchenkoMolly Megraw

dna sequencinggenomicsmolecular biologygene expressionbioinformatics

Dnase I Sim: A Simplified In-Nucleus Method for Dnase I Hypersensitive Site Sequencing. Methods in molecular biology (2017)

Sergei A. FilichkinMolly Megraw

simplified in-nucleus methodmolecular biologysite sequencingbioinformaticsgenetics

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Molly Megraw

Associate Professor

Oregon State University

Affiliations

College of Engineering

Chemical, Biological, and Environmental Engineering

College of Agricultural Sciences

Department of Botany and Plant Pathology

Molly Megraw is currently serving as a Chemical, Biological, And Environmental Engineering Associate Professor at Oregon State University.

Honors

Create free account to unlock more features

Experiences

Create free account to unlock more features

Education

Create free account to unlock more features

Molly Megraw

Oregon State University

Associate Professor

You can click a keyword to filter the displayed items

Notable Scholarly Works

Notable Federal Grants

Collaborators

Comparative Analysis of Salinity Response Transcriptomes in Salt-Tolerant Pokkali and Susceptible Ir29 Rice. bioRxiv (Cold Spring Harbor Laboratory) (2023)

Matthew GenizaSamuel E. FoxAbigail SageMitra AnsariolaMolly MegrawPankaj Jaiswal

Quality Control and Evaluation of Plant Epigenomics Data. The Plant Cell (2021)

Robert J SchmitzAlexandre P MarandXuan ZhangRebecca A MosherFranziska TurckXuemei ChenMichael J AxtellXuehua ZhongSiobhan M BradyMolly MegrawBlake C Meyers

environmental scienceepigenomicsplant biologyplant epigenomics dataplant science

Accurate Transcription Start Sites Enable Mining for the Cis-Regulatory Determinants of Tissue Specific Gene Expression. bioRxiv (Cold Spring Harbor Laboratory) (2020)

Mitra AnsariolaValerie N. FraserSergei A. FilichkinMaria G. IvanchenkoZachary A. BrightRussell A. GouldOlivia R. OzgucShawn T. O’NeilMolly Megraw

Metabolomics Analysis Reveals Both Plant Variety and Choice of Hormone Treatment Modulate Vinca Alkaloid Production in Catharanthus Roseus. Plant Direct (2020)

Valerie N. FraserBenjamin PhilmusMolly Megraw

plant varietyenvironmental sciencebotanymetabolomicsplant biologyplant physiologyplant science

Rna-Seq Analysis of Genes Affected by Cyclophilin a/Diageotropica (Dgt) in Tomato Root Development. F1000Research (2020)

Maria G. IvanchenkoOlivia R. OzgucStephanie R. BollmannValerie N. FraserMolly Megraw

Plantsimlab - a Modeling and Simulation Web Tool for Plant Biologists. BMC Bioinformatics (2019)

S. HaE. DimitrovaS. HoopsD. AltarawyM. AnsariolaD. DebJ. GlazebrookR. HillmerH. ShahinF. KatagiriJ. McDowellM. MegrawJ. SetubalB. M. TylerR. Laubenbacher

computer scienceplant biologistsweb-based simulationmodeling toolsplant biologymodeling and simulationbioinformaticssimulation web tool

CONVMD: Convolutive Matrix Decomposition for Classification of Matrix Data. (2018)

Phung LaiRaviv RaichMolly Megraw

data classificationclassification methodmatrix dataconvolutive matrix decompositionbiometricsdata sciencemachine learning

Identification of Transcription Factors From Nf-Y, Nac, and Spl Families Responding to Osmotic Stress in Multiple Tomato Varieties. Plant Science (2018)

Sergei A. FilichkinMitra AnsariolaValerie N. FraserMolly Megraw

Nanocage-XL: An Approach to High-Confidence Transcription Start Site Sequencing. Methods in molecular biology (2018)

Maria G. IvanchenkoMolly Megraw

dna sequencinggenomicsmolecular biologygene expressionbioinformatics

Dnase I Sim: A Simplified In-Nucleus Method for Dnase I Hypersensitive Site Sequencing. Methods in molecular biology (2017)

Sergei A. FilichkinMolly Megraw

simplified in-nucleus methodmolecular biologysite sequencingbioinformaticsgenetics

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rna secondary structure

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