Faculty

Institution

Unit

Venue

Matthew Hudson

Professor of Bioinformatics

UIUC

Affiliations

College of Agricultural, Consumer and Environmental Sciences

Crop Sciences

Department of Crop Sciences

Matthew Hudson is currently serving as a College Of Agricultural, Consumer And Environmental Sciences Professor of Bioinformatics at Uiuc.

Honors

Create free account to unlock more features

Experiences

Create free account to unlock more features

Education

Create free account to unlock more features

Matthew Hudson

UIUC

Professor of Bioinformatics

You can click a keyword to filter the displayed items

genetics genomics biology genome biology genetic variation plant genomics plant genetics molecular genetics molecular plant pathology gene expression plant biotechnology plant science plant physiology evolutionary biology microbiology plant molecular biology functional genomics integrative plant biology population genetics bioinformatics agricultural biotechnology genome sequencing molecular evolution plant disease molecular plant-microbe interactions crop protection molecular ecology phytochrome plant cells comparative genomics plant breeding photomorphogenesis applied genetics crop improvement soybean cyst nematode molecular informatics high throughput sequencing genome studies molecular breeding insect molecular biology biomedical informatics computational genomics plant immunity induced resistance nematode pest photosynthesis genome analysis next-generation sequencing evolutionary genetics small rna scn resistance biological evolution plant pathogen effector genome-wide association studies wild soybean sociogenomics social insects insect social behavior rna biology plant development honey bee genome analysis toolkit soybean populations plant stress transcription regulation gene evolution allele-defined genome copy number variation sacred lotus high throughput sentieon dnaseq family members autopolyploid sugarcane soybean genome copy number fine mapping genomic variants trait variation precision breeding population genomics genetic programming

Video Presentations

Notable Scholarly Works

Notable Federal Grants

Collaborators

Enhancing Lipid Production in Plant Cells Through Automated High-Throughput Genome Editing and Phenotyping. The Plant Cell (2025)

Jia DongSeth W CroslowStephan T LaneDaniel C CastroJantana BlanfordShuaizhen ZhouKiyoul ParkSteven BurgessMike RootEdgar CahoonJohn ShanklinJonathan V SweedlerHuimin ZhaoMatthew E Hudson

synthetic plant biologygenome editingplant biotechnologybiotechnologybiomolecular engineeringbiotechnology advancemolecular biotechnologygolden gate cloningplant cellsgenetic engineeringcallus cellsbiological engineeringzea mays

Genomic Analysis and Predictive Modeling in the Northern Uniform Soybean Tests. Crop Science (2025)

Cleiton A. WarthaBenjamin W. CampbellVishnu RamasubramanianLiana NiceAdam BrockGuohong CaiM. Milad EskandariGeorge GraefMathew E. HudsonDavid HytenAdam L. MahanNicolas F. MartinLeah McHaleCarrie MirandaEliana Monteverde DominguezRex NelsonKaty RaineyIstvan RajcanAndrew ScabooWilliam SchapaughAsheesh K. SinghJoão Paolo GomesDechun WangAaron J. Lorenz

genomicsgenome biologyagricultural biotechnologygenome-wide association studieshistorical nust datageneticsgenetic variationagronomymolecular breedingbiostatisticshistorical dataexperimental soybeanplant genomicsquantitative genetics

Synthetic Feed-Forward Loop Circuit Boosts Transgene Expression in Sugarcane. Plant Cell Reports (2025)

Zhihai ZhangSultana AnwarErin J YafusoEvelyn Tatiana Zuniga SotoChangwei LiGuangbin LuoStephen P MooseKankshita SwaminathanFredy AltpeterMatthew E Hudson

reporter gene expressionagricultural biotechnologysynthetic plant biologyplant biotechnologygeneticsbiotechnologybiomolecular engineeringplant biochemistrygenetic engineeringsynthetic biologysugarcane plantstransgene expression

Common Signatures of Selection Reveal Target Loci for Breeding Across Soybean Populations. The Plant Genome (2024)

João Paulo Gomes VianaArián AvalosZhihai ZhangRandall NelsonMatthew E. Hudson

genomicsgenome biologycommon signaturesplant geneticsgeneticsgenetic variationevolutionary biologyagronomymolecular ecologymolecular breedingplant breedingcrop improvementalternative soybeansoybean populationspopulation geneticsquantitative genetics

CORRECTION: The Genome of the Soybean Cyst Nematode (Heterodera Glycines) Reveals Complex Patterns of Duplications Involved in the Evolution of Parasitism Genes. BMC Genomics (2024)

Rick MasonbrinkTom R. MaierUsha MuppiralaArun S. SeetharamEtienne LordParijat S. JuvaleJeremy SchmutzNathan T. JohnsonDmitry KorkinMelissa G. MitchumBenjamin MimeeSebastian Eves-van den AkkerMatthew HudsonAndrew J. SeverinThomas J. Baum

molecular plant pathologyparasitologynematode pestmolecular ecologysoybean cyst nematodeheterodera glycinesphylogeneticsgenome biologyplant diseaseparasite genomicscomparative genomicsbiologygenome sequencinggenomicsgeneticsmolecular geneticsmolecular evolutionmicrobiologyparasitism genes

Enhancing Lipid Production in Plant Cells Through High-Throughput Genome Editing and Phenotyping via a Scalable Automated Pipeline. bioRxiv (Cold Spring Harbor Laboratory) (2024)

Jia DongSeth W. CroslowStephan T. LaneDaniel C. CastroJantana BlanfordShuaizhen ZhouKiyoul ParkSteven BurgessMike RootEdgar CahoonJohn ShanklinJonathan V. SweedlerHuimin ZhaoMatthew E. Hudson

synthetic plant biologygenome editinghigh-throughput screeningplant biotechnologybiotechnologybiomolecular engineeringbiotechnology advancemolecular biotechnologyplant cellsbiomoleculesgenetic engineeringlipid productioncrispr activationbiological engineeringgolden gate

Genome Scans for Selection Signatures Identify Candidate Virulence Genes for Adaptation of the Soybean Cyst Nematode to Host Resistance. Molecular Ecology (2024)

Khee Man KwonJoão P. G. VianaKimberly K. O. WaldenMariola UsovskyAndrew M. ScabooMatthew E. HudsonMelissa G. Mitchum

genomicsgenome biologymolecular plant pathologyplant pathogen effectorplant genomicsgeneticsgenetic variationsoybean cyst nematodescn populationsplant diseasemolecular plant-microbe interactionsscn virulence genesplant pathologymicrobiologyevolutionary biology

Impact of Rhg1 Copy Number Variation on a Soybean Cyst Nematode Resistance Transcriptional Network. G3 Genes Genomes Genetics (2024)

Usawadee ChaipromEsmaeil MiraeizTong Geon LeeJenny DrnevichMatthew Hudson

genomicsmolecular plant pathologygene expressionplant defense genetranscription (biology)scn infectiongeneticsbiologytranscription factorsplant physiologysoybean yield lossplant diseasemolecular plant-microbe interactionsinduced resistanceplant pathologyscn responsesplant immunityplant genomics

Major Impacts of Widespread Structural Variation on Sorghum. Genome Research (2024)

Zhihai ZhangJoao Paulo Gomes VianaBosen ZhangKimberly K.O. WaldenHans Müller PaulStephen P. MooseGeoffrey P. MorrisChris DaumKerrie W. BarryNadia ShakoorMatthew E. Hudson

genomicsgenome biologyheritability estimatesplant geneticsgeneticsgenetic variationevolutionary biologywidespread structural variationplant scienceplant genomicspopulation geneticssv polymorphisms

Soybean Genomics Research Community Strategic Plan: A Vision for 2024–2028. The Plant Genome (2024)

Robert M. StuparAnna M. LockeDoug K. AllenMinviluz G. StaceyJianxin MaJackie WeissRex T. NelsonMatthew E. HudsonTrupti JoshiZenglu LiQijian SongJoseph R. JedlickaGustavo C. MacIntoshDavid GrantWayne A. ParrottTom E. ClementeGary StaceyYong‐qiang Charles AnJose Aponte‐RiveraMadan K. BhattacharyyaIvan BaxterKristin D. BilyeuJacqueline D. CampbellSteven B. CannonSteven J. CloughShaun J. CurtinBrian W. DiersAnne E. DorranceJason D. GillmanGeorge L. GraefC. Nathan HancockKaren A. HudsonDavid L. HytenAardra KachrooJenny KoebernickMarc LibaultAaron J. LorenzAdam L. MahanJon M. MassmanMichaela McGinnKhalid MeksemJack K. OkamuroKerry F. PedleyKaty Martin RaineyAndrew M. ScabooJeremy SchmutzBao‐Hua SongAdam D. SteinbrennerBenjamin B. Stewart‐BrownKatalin TothDechun WangLisa WeaverBo ZhangMichelle A. GrahamJamie A. O'Rourke

genomicsgenome biologyapplied soybean researchersagricultural biotechnologyfunctional genomicssoybean researchsoybean researchersplant biotechnologyplant geneticsgeneticsbiologycrop improvementintegrative plant biologyplant breedingplant scienceplant genomics

1
2
3
4
5
12
10 / page

Matthew Hudson

Professor of Bioinformatics

UIUC

Affiliations

College of Agricultural, Consumer and Environmental Sciences

Crop Sciences

Department of Crop Sciences

Matthew Hudson is currently serving as a College Of Agricultural, Consumer And Environmental Sciences Professor of Bioinformatics at Uiuc.

Honors

Create free account to unlock more features

Experiences

Create free account to unlock more features

Education

Create free account to unlock more features

Matthew Hudson

UIUC

Professor of Bioinformatics

You can click a keyword to filter the displayed items

Video Presentations

Notable Scholarly Works

Notable Federal Grants

Collaborators

Enhancing Lipid Production in Plant Cells Through Automated High-Throughput Genome Editing and Phenotyping. The Plant Cell (2025)

Jia DongSeth W CroslowStephan T LaneDaniel C CastroJantana BlanfordShuaizhen ZhouKiyoul ParkSteven BurgessMike RootEdgar CahoonJohn ShanklinJonathan V SweedlerHuimin ZhaoMatthew E Hudson

Genomic Analysis and Predictive Modeling in the Northern Uniform Soybean Tests. Crop Science (2025)

Synthetic Feed-Forward Loop Circuit Boosts Transgene Expression in Sugarcane. Plant Cell Reports (2025)

Zhihai ZhangSultana AnwarErin J YafusoEvelyn Tatiana Zuniga SotoChangwei LiGuangbin LuoStephen P MooseKankshita SwaminathanFredy AltpeterMatthew E Hudson

Common Signatures of Selection Reveal Target Loci for Breeding Across Soybean Populations. The Plant Genome (2024)

João Paulo Gomes VianaArián AvalosZhihai ZhangRandall NelsonMatthew E. Hudson

CORRECTION: The Genome of the Soybean Cyst Nematode (Heterodera Glycines) Reveals Complex Patterns of Duplications Involved in the Evolution of Parasitism Genes. BMC Genomics (2024)

Enhancing Lipid Production in Plant Cells Through High-Throughput Genome Editing and Phenotyping via a Scalable Automated Pipeline. bioRxiv (Cold Spring Harbor Laboratory) (2024)

Jia DongSeth W. CroslowStephan T. LaneDaniel C. CastroJantana BlanfordShuaizhen ZhouKiyoul ParkSteven BurgessMike RootEdgar CahoonJohn ShanklinJonathan V. SweedlerHuimin ZhaoMatthew E. Hudson

Genome Scans for Selection Signatures Identify Candidate Virulence Genes for Adaptation of the Soybean Cyst Nematode to Host Resistance. Molecular Ecology (2024)

Khee Man KwonJoão P. G. VianaKimberly K. O. WaldenMariola UsovskyAndrew M. ScabooMatthew E. HudsonMelissa G. Mitchum

Impact of Rhg1 Copy Number Variation on a Soybean Cyst Nematode Resistance Transcriptional Network. G3 Genes Genomes Genetics (2024)

Usawadee ChaipromEsmaeil MiraeizTong Geon LeeJenny DrnevichMatthew Hudson

Major Impacts of Widespread Structural Variation on Sorghum. Genome Research (2024)

Zhihai ZhangJoao Paulo Gomes VianaBosen ZhangKimberly K.O. WaldenHans Müller PaulStephen P. MooseGeoffrey P. MorrisChris DaumKerrie W. BarryNadia ShakoorMatthew E. Hudson

genomicsgenome biologyheritability estimatesplant geneticsgeneticsgenetic variationevolutionary biologywidespread structural variationplant scienceplant genomicspopulation geneticssv polymorphisms

Soybean Genomics Research Community Strategic Plan: A Vision for 2024–2028. The Plant Genome (2024)

1
2
3
4
5
12
10 / page