Faculty

Institution

Unit

Venue

John E. Carlson

Academy Professor and Professor Emeritus of Molecular Genetics

Pennsylvania State University

Affiliations

the Penn State College of Agricultural Sciences

Department of Plant Science

John E. Carlson is currently serving as a Plant Science Academy Professor and Professor Emeritus of Molecular Genetics at Pennsylvania State University.

Honors

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Experiences

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Education

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John E. Carlson

Pennsylvania State University

Academy Professor and Professor Emeritus of Molecular Genetics

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genetics plant science genomics botany plant biology evolutionary biology molecular biology plant physiology plant genetics ecology genome biology plant genomics avian biology population genetics plant biotechnology gene expression microbial ecology bioinformatics phylogenetics plant molecular biology entomology comparative genomics insect science agricultural biotechnology genome sequencing rna biology forest biology integrative plant biology molecular ecology forest research vegetation science plant biochemistry plant stress soil biology plant disease canadian studies plant development plant taxonomy systematics reproductive biology pest science phylogenomics plant reproduction applied genetics transcriptomics technology crop physiology genome analysis reference genome plant breeding plant ecology dna sequencing castanea mollissima chinese chestnut anoplophora glabripennis sugar maple tree peony phylogenetic analysis plant-insect interactions experimental plant biology animal genetics plant-microbe interactions translational bioinformatics cytogenetics gene regulation genome studies genome-wide association studies microbial community transcriptome analysis expression profiling basal eudicot amborella genome white spruce wood-boring beetle physical map est database moniliophthora roreri renewable energy conservation genetics functional genomics

Notable Scholarly Works

Notable Federal Grants

Collaborators

A Haplotype‐Resolved Reference Genome of Quercus Alba Sheds Light on the Evolutionary History of Oaks. New Phytologist (2025)

Drew A. LarsonMargaret E. StatonBeant KapoorNurul Islam‐FaridiTetyana ZhebentyayevaShenghua FanJozsef StorkAustin ThomasAlaa S. AhmedElizabeth C. StantonAllan HoustonScott E. SchlarbaumMatthew W. HahnJohn E. CarlsonAlbert G. AbbottSeth DeBoltC. Dana Nelson

plant genomicsevolutionary historyreference genomeplant sciencegenomicsevolutionary biologyplant geneticsgenome biologyhaplotype-resolved reference genome

Sources of Genetic Variation in Faidherbia Albida (Del.) a. Chev. Sub-Saharan African Populations. Forests (2025)

Tchapda Dorothy TchatchouaIain MathiesonTetyana ZhebentyayevaR. Scott PoethigJohn E. Carlson

geneticspopulation geneticssub-saharan african populationsgenetic variationfaidherbia albida

Distance-Dependent Mating but Considerable Pollen Immigration in an Isolated Quercus Rubra Planting in Germany. European Journal of Forest Research (2024)

Tania Dominguez-FloresKatharina B. BuddeJohn E. CarlsonOliver Gailing

geneticsforest entomologybotanyforest ecologyplant physiologyplant scienceevolutionary biologyforest biologyplant ecologyforestrybiogeographydistance-dependent matingecologyforest research

EDITORIAL: Deciphering Mechanisms of Plant Adaptation and Resistance Under Cold Temperature Stress. Frontiers in Plant Science (2024)

Sabir Hussain ShahJohn E. CarlsonKarl J. NiklasAdalberto Benavides-MendozaFelipe Klein Ricachenevsky

extreme environmentsplant biologyplant adaptationplant physiologyplant scienceintegrative plant biologybiologyplant stressabiotic stresscold temperature stressadaptation

Bacterial Assembly in the Switchgrass Rhizosphere is Shaped by Phylogeny, Host Genotype, and Growing Site. bioRxiv (Cold Spring Harbor Laboratory) (2023)

Jeremy SutherlandTerrence H. BellStacy BonosChristopher TkachJulie HansenRyan CrawfordJohn E. CarlsonJesse R. Lasky

switchgrass rhizospheremicrobial ecologybacterial assemblyevolutionary biologyhost genotype

Influence of Environmental Conditions on Faidherbia Albida Parklands in the Sudano Sahelian Zone of Cameroon. Zenodo (CERN European Organization for Nuclear Research) (2023)

Dorothy Tchapda TchatchouaOumarou HamidouMariam MaloumJohn E. CarlsonOumarou Palou Madi

forest ecologyenvironmental researchplant sciencespatial ecologyfaidherbia albida parklandssudano sahelian zoneenvironmental conditionsforestrylandscape ecologyenvironmental scienceecologyarid environments

Genetic Variation and Conservation Implications in Pennsylvania for the Rare and Imperiled Buffalo Nut (Cervantesiaceae; Pyrularia Pubera Michaux). Annals of Carnegie Museum (2022)

Krystle A. SwartzT. Casey WeathersNicole M. ZembowerDi WuAndrea KautzBryce StoufferJohn W. WenzelJohn E. Carlson

museologyornithologygeneticsavian biologyconservation implicationsbotanyevolutionary biologyconservation biologygenetic variationecologymuseum conservation

Genome-Wide Association Study of 23 Flowering Phenology Traits and 4 Floral Agronomic Traits in Tree Peony ( Paeonia Section Moutan DC.) Reveals Five Genes Known to Regulate Flowering Time. Horticulture Research (2022)

Yuying LiLili GuoZhanying WangDehui ZhaoDalong GuoJohn E. CarlsonWeilun YinXiaogai Hou

geneticstree peonyflowering timegenomicsfloral agronomic traitsmariculturegenome-wide association studies

Host Genomic Influence on Bacterial Composition in the Switchgrass Rhizosphere. Molecular Ecology (2022)

Jeremy SutherlandTerrence BellRyan V. TrexlerJohn E. CarlsonJesse R. Lasky

bacterial compositionswitchgrass rhizospheremicrobial ecologymolecular ecologyecologyhost genomic influence

Integrated Analysis of Mirnaome Transcriptome and Degradome Reveals Mirna-Target Modules Governing Floral Florescence Development and Senescence Across Early- and Late-Flowering Genotypes in Tree Peony. Frontiers in Plant Science (2022)

Lili GuoYuying LiChenjie ZhangZhanying WangJohn E. CarlsonWeinlun YinXiuxin ZhangXiaogai Hou

integrated analysisfloral florescence developmentgene expressionagricultural biotechnologyplant developmentdevelopmental biologyplant genomicsplant sciencetranscriptometranscriptomics technologybiochemical sciencesgeneticstree peonyplant physiologygenomicsplant biotechnologylate-flowering genotypesplant biologyepigeneticsfunctional genomicsmirnaome transcriptomeplant geneticsmolecular biology

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John E. Carlson

Academy Professor and Professor Emeritus of Molecular Genetics

Pennsylvania State University

Affiliations

the Penn State College of Agricultural Sciences

Department of Plant Science

John E. Carlson is currently serving as a Plant Science Academy Professor and Professor Emeritus of Molecular Genetics at Pennsylvania State University.

Honors

Create free account to unlock more features

Experiences

Create free account to unlock more features

Education

Create free account to unlock more features

John E. Carlson

Pennsylvania State University

Academy Professor and Professor Emeritus of Molecular Genetics

You can click a keyword to filter the displayed items

Notable Scholarly Works

Notable Federal Grants

Collaborators

A Haplotype‐Resolved Reference Genome of Quercus Alba Sheds Light on the Evolutionary History of Oaks. New Phytologist (2025)

plant genomicsevolutionary historyreference genomeplant sciencegenomicsevolutionary biologyplant geneticsgenome biologyhaplotype-resolved reference genome

Sources of Genetic Variation in Faidherbia Albida (Del.) a. Chev. Sub-Saharan African Populations. Forests (2025)

Tchapda Dorothy TchatchouaIain MathiesonTetyana ZhebentyayevaR. Scott PoethigJohn E. Carlson

geneticspopulation geneticssub-saharan african populationsgenetic variationfaidherbia albida

Distance-Dependent Mating but Considerable Pollen Immigration in an Isolated Quercus Rubra Planting in Germany. European Journal of Forest Research (2024)

Tania Dominguez-FloresKatharina B. BuddeJohn E. CarlsonOliver Gailing

geneticsforest entomologybotanyforest ecologyplant physiologyplant scienceevolutionary biologyforest biologyplant ecologyforestrybiogeographydistance-dependent matingecologyforest research

EDITORIAL: Deciphering Mechanisms of Plant Adaptation and Resistance Under Cold Temperature Stress. Frontiers in Plant Science (2024)

Sabir Hussain ShahJohn E. CarlsonKarl J. NiklasAdalberto Benavides-MendozaFelipe Klein Ricachenevsky

extreme environmentsplant biologyplant adaptationplant physiologyplant scienceintegrative plant biologybiologyplant stressabiotic stresscold temperature stressadaptation

Bacterial Assembly in the Switchgrass Rhizosphere is Shaped by Phylogeny, Host Genotype, and Growing Site. bioRxiv (Cold Spring Harbor Laboratory) (2023)

Jeremy SutherlandTerrence H. BellStacy BonosChristopher TkachJulie HansenRyan CrawfordJohn E. CarlsonJesse R. Lasky

switchgrass rhizospheremicrobial ecologybacterial assemblyevolutionary biologyhost genotype

Influence of Environmental Conditions on Faidherbia Albida Parklands in the Sudano Sahelian Zone of Cameroon. Zenodo (CERN European Organization for Nuclear Research) (2023)

Dorothy Tchapda TchatchouaOumarou HamidouMariam MaloumJohn E. CarlsonOumarou Palou Madi

Genetic Variation and Conservation Implications in Pennsylvania for the Rare and Imperiled Buffalo Nut (Cervantesiaceae; Pyrularia Pubera Michaux). Annals of Carnegie Museum (2022)

Krystle A. SwartzT. Casey WeathersNicole M. ZembowerDi WuAndrea KautzBryce StoufferJohn W. WenzelJohn E. Carlson

museologyornithologygeneticsavian biologyconservation implicationsbotanyevolutionary biologyconservation biologygenetic variationecologymuseum conservation

Yuying LiLili GuoZhanying WangDehui ZhaoDalong GuoJohn E. CarlsonWeilun YinXiaogai Hou

geneticstree peonyflowering timegenomicsfloral agronomic traitsmariculturegenome-wide association studies

Host Genomic Influence on Bacterial Composition in the Switchgrass Rhizosphere. Molecular Ecology (2022)

Jeremy SutherlandTerrence BellRyan V. TrexlerJohn E. CarlsonJesse R. Lasky

bacterial compositionswitchgrass rhizospheremicrobial ecologymolecular ecologyecologyhost genomic influence

Lili GuoYuying LiChenjie ZhangZhanying WangJohn E. CarlsonWeinlun YinXiuxin ZhangXiaogai Hou

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