Faculty

Institution

Unit

Venue

Fiona M McCarthy

Professor

University of Arizona

Affiliations

College of Agriculture & Life Sciences

School of Animal and Comparative Biomedical Sciences

Fiona M Mccarthy is currently serving as a College Of Agriculture & Life Sciences Professor at University of Arizona.

Honors

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Experiences

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Education

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Fiona M McCarthy

University of Arizona

Professor

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genetics genomics genome biology bioinformatics immunology proteomics avian biology virology molecular biology functional genomics gene expression transcriptome poultry science data science animal genetics veterinary medicine mammalian biology animal physiology animal science gene ontology animal virus bioinformatics database genome analysis biological databases avian medicine plant science genome sequencing plant biotechnology viral pathogenesis functional annotation ornithology reproductive biology cytogenetics transcriptomics technology plant genetics livestock science nucleic acids rna biology ontology (information science) viral genetics microarray data analysis gene sequence annotation computational genomics databases plo biology veterinary science veterinary microbiology chromosome biology differential detergent fractionation crocodilian genomes reference genome chicken genes curated database agricultural sciences host factors transplantation medicine veterinary research veterinary physiology population genomics gene ontology annotations molecular interactions functional modeling host-pathogen interactions reference genome project biological embedding data annotation annotation tool database theory long-read sequencing gene deletion data dna sequencing genetic linkage map bovine genome international action ancestral patterns variation impact biomedical informatics pathogenesis systems biology data curation molecular informatics

Video Presentations

Notable Scholarly Works

Notable Federal Grants

Collaborators

Cat-Gxd: Centralized Access to Gene Expression Datasets. (2025)

scientific databiomedical informaticsmicroarray data analysisbioinformaticscentralized accessdata sciencegene expression profilingknowledge discovery

Normative Aging Results in Degradation of Gene Networks in a Zebra Finch Basal Ganglia Nucleus Dedicated to Vocal Behavior. Neurobiology of Aging (2025)

brain mechanismsneurobiological mechanismsgeneticsnormative aging resultsneuroscience of aginggene networksneurosciencecentral nervous systemneurogeneticsvocal behaviorbehavioral neurosciencemolecular neurodegenerationnervous system

Providing Standardized Gene Nomenclature for Domestic Ungulate Scavenger Receptor Genes.. PubMed (2025)

receptorsgeneticsreceptor (biochemistry)mammalian biologyhuman geneticsstandardized gene nomenclatureallergy

Current Challenges and Future of Agricultural Genomes to Phenomes in the USA. Genome biology (2024)

Christopher K. TuggleJennifer L. ClarkeBrenda M. MurdochEric LyonsNicole M. ScottBedrich BenešJacqueline D. CampbellHenri ChungCourtney L. DaigleSruti Das ChoudhuryJack C. M. DekkersJoao R. R. DóreaDavid S. ErtlMax FeldmanBreno O. FragomeniJanet E. FultonCarmela R. GuadagnoDarren E. HagenAndrew S. HessLuke M. KramerCarolyn J. Lawrence-DillAlexander E. LipkaThomas LübberstedtFiona M. McCarthyStephanie D. McKaySeth C. MurrayPenny K. RiggsTroy N. RowanMoira J. SheehanJuan P. SteibelAddie M. ThompsonKara J. ThorntonCurtis P. Van TassellPatrick S. Schnable

geneticsphenomicsgenome studiesagronomyagricultural genomegenomicsagricultural genomesgenome analysisgenetic variationphenome initiativeagricultural biotechnologyagricultural economicsgenome biology

Chicken Domestication Began at Least 3,500 Years Ago for Purposes of Divination, Cockfighting, and Food. Prior to Industrial Scale Chicken Production, Domestication Selected Larger Birds With Increased Egg Production. in the Mid-20Th Century Companies Began Intensive Selection With the Broiler (Meat) Industry Focusing on Improved Feed Conversion, Rapid Growth, and Breast Muscle Yield. Here We Present Proteomic Analysis Comparing the Modern Broiler Line, Ross 708, With the Uiuc Legacy Line Which is Not Selected for Growth Traits. Breast Muscle Proteome Analysis Identifies Cellular Processes That Have Responded to Human Directed Artificial Selection. Mass Spectrometry Was Used to Identify Protein Level Differences in the Breast Muscle of 6-Day Old Chicks From Modern and Legacy Lines. Our Results Indicate Elevated Levels of Stress Proteins, Ribosomal Proteins and Proteins That Participate in the Innate Immune Pathway in the Modern Chickens. Furthermore, the Comparative Analyses Indicated Expression Differences for Proteins Involved in Multiple Biochemical Pathways. in Particular, the Modern Line Had Elevated Levels of Proteins Affecting the Pentose Phosphate Pathway, Tca Cycle and Fatty Acid Oxidation While Proteins Involved in the First Phase of Glycolysis Were Reduced Compared to the Legacy Line. These Analyses Provide Hypotheses Linking the Morphometric Changes Driven by Human Directed Selection to Biochemical Pathways. These Results Also Have Implications for the Poultry Industry, Specifically Wooden Breast Disease Which is Linked to Rapid Breast Muscle Growth.. PloS one (2023)

developmental biologymetabolic pathwayspoultry sciencegeneticsmetabolismproteome researchmass spectrometryross 708animal biosciencebiologyproteomicsanimal physiologyanimal nutritionpoultry farmingchicken domesticationproteomic technologies

Comparative Proteomic Analysis of Tail Regeneration in the Green Anole Lizard, Anolis Carolinensis. Natural Sciences (2023)

Cindy XuElizabeth D. HutchinsWalter EckalbarKen PendarvisDerek M. BensonDouglas F. LakeFiona M. McCarthyKenro Kusumi

avian biologycomparative proteomic analysisneuroscienceanimal sciencebiologyproteomicsgreen anole lizardmammalian biologytail regenerationecologyentomology

Constraints on Primordial Non-Gaussianity From Halo Bias Measured Through Cmb Lensing Cross-Correlations. Physical review. D/Physical review. D. (2023)

Fiona McCarthyMathew S. MadhavacherilAbhishek S. Maniyar

environmental sciencestellar astrophysicscosmologyrelativistic astrophysicsastronomyplanetary scienceshalo biashigh-energy astrophysicsdark matterprimordial non-gaussianity

Converting Dark Matter to Dark Radiation Does Not Solve Cosmological Tensions. Physical review. D/Physical review. D. (2023)

Fiona McCarthyJ. Colin Hill

cosmological tensionsdark mattercosmology

Embl-Ebi Services Review. HAL (Le Centre pour la Communication Scientifique Directe) (2023)

Alan ArchibaldJürg BählerJildau BouwmanRobin BuellFrancesca CiccarelliLucy CollinsonGerhard EckerJean-Loup FaulonMartin FennerJanet KelsoOliver KohlbacherPaul LaskoKathryn LilleyCecilia LindgrenAlice MachardyEdward MarcotteLennart MartensFiona MccarthyLukas MuellerNicola MulderBrenda MurdochMichelle PeckhamJim ReecyMartin RomackerPeter RosenthalHelen SaibilGwenola Tosser-KloppMathias UhlénAlfonso ValenciaChristian Von Mering

embl-ebi services reviewemergency medicine

Immunoglobulin-Like Receptors in Chickens: Identification, Functional Characterization, and Renaming to Cluster Homolog of Immunoglobulin-Like Receptors. Poultry Science (2023)

Brandi A. SparlingTheros T. NgAnaid Carlo-AllendeFiona M. McCarthyRobert L. TaylorYvonne Drechsler

avian biologyornithologylivestock sciencefunctional characterizationimmunologypoultry scienceimmunoglobulin-like receptorsentomology

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Fiona M McCarthy

Professor

University of Arizona

Affiliations

College of Agriculture & Life Sciences

School of Animal and Comparative Biomedical Sciences

Fiona M Mccarthy is currently serving as a College Of Agriculture & Life Sciences Professor at University of Arizona.

Honors

Create free account to unlock more features

Experiences

Create free account to unlock more features

Education

Create free account to unlock more features

Fiona M McCarthy

University of Arizona

Professor

You can click a keyword to filter the displayed items

Video Presentations

Notable Scholarly Works

Notable Federal Grants

Collaborators

Cat-Gxd: Centralized Access to Gene Expression Datasets. (2025)

scientific databiomedical informaticsmicroarray data analysisbioinformaticscentralized accessdata sciencegene expression profilingknowledge discovery

Normative Aging Results in Degradation of Gene Networks in a Zebra Finch Basal Ganglia Nucleus Dedicated to Vocal Behavior. Neurobiology of Aging (2025)

Providing Standardized Gene Nomenclature for Domestic Ungulate Scavenger Receptor Genes.. PubMed (2025)

receptorsgeneticsreceptor (biochemistry)mammalian biologyhuman geneticsstandardized gene nomenclatureallergy

Current Challenges and Future of Agricultural Genomes to Phenomes in the USA. Genome biology (2024)

geneticsphenomicsgenome studiesagronomyagricultural genomegenomicsagricultural genomesgenome analysisgenetic variationphenome initiativeagricultural biotechnologyagricultural economicsgenome biology

Comparative Proteomic Analysis of Tail Regeneration in the Green Anole Lizard, Anolis Carolinensis. Natural Sciences (2023)

Cindy XuElizabeth D. HutchinsWalter EckalbarKen PendarvisDerek M. BensonDouglas F. LakeFiona M. McCarthyKenro Kusumi

avian biologycomparative proteomic analysisneuroscienceanimal sciencebiologyproteomicsgreen anole lizardmammalian biologytail regenerationecologyentomology

Constraints on Primordial Non-Gaussianity From Halo Bias Measured Through Cmb Lensing Cross-Correlations. Physical review. D/Physical review. D. (2023)

Fiona McCarthyMathew S. MadhavacherilAbhishek S. Maniyar

environmental sciencestellar astrophysicscosmologyrelativistic astrophysicsastronomyplanetary scienceshalo biashigh-energy astrophysicsdark matterprimordial non-gaussianity

Converting Dark Matter to Dark Radiation Does Not Solve Cosmological Tensions. Physical review. D/Physical review. D. (2023)

Fiona McCarthyJ. Colin Hill

cosmological tensionsdark mattercosmology

Embl-Ebi Services Review. HAL (Le Centre pour la Communication Scientifique Directe) (2023)

embl-ebi services reviewemergency medicine

Immunoglobulin-Like Receptors in Chickens: Identification, Functional Characterization, and Renaming to Cluster Homolog of Immunoglobulin-Like Receptors. Poultry Science (2023)

Brandi A. SparlingTheros T. NgAnaid Carlo-AllendeFiona M. McCarthyRobert L. TaylorYvonne Drechsler

avian biologyornithologylivestock sciencefunctional characterizationimmunologypoultry scienceimmunoglobulin-like receptorsentomology

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