Faculty

Institution

Unit

Venue

Erica N Larschan

Associate Professor of Molecular Biology Cell Biology and Biochemistry John E Savage Assistant Professor of Computer Science and Data Science

Brown University

Affiliations

Division of Biology and Medicine

Molecular Biology, Cell Biology, and Biochemistry

Warren Alpert Medical School

Molecular Biology, Cell Biology, & Biochemistry

Erica N Larschan is currently serving as a Division Of Biology And Medicine Associate Professor of Molecular Biology Cell Biology and Biochemistry John E Savage Assistant Professor of Computer Science and Data Science at Brown University.

Honors

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Experiences

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Education

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Erica N Larschan

Brown University

Associate Professor of Molecular Biology Cell Biology and Biochemistry John E Savage Assistant Professor of Computer Science and Data Science

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genetics developmental biology insect molecular biology molecular biology genomics cytogenetics gene expression avian biology genome biology chromosome biology biology epigenetics gene regulation mammalian biology molecular genetics molecular cell biology gene function developmental genetics dosage compensation bioinformatics chromatin human genetics epigenomics structural biology molecular regulation rna biology transcription regulation insect science genomic mechanisms chromatin accessibility protein science epigenetic changes comprehensive analysis experimental gerontology plo biology developmental cell developmental system biogerontology single-cell analysis msl complex clamp protein drosophila dosage compensation animal science molecular structure structural molecular biology developmental science aging cell comparative genomics sequence motif gene characterization genetic mechanisms mammalian physiology sex differences embryonic development regularization (mathematics) data normalization genome analysis aging process comparative analysis life history protein genetics molecular research pharmacoeconomics treatment effects treatment options functional regulation drosophila melanogaster chromatin landscape metazoan chromatin organization chromatin entry sequence-independent mechanism nucleosome occupancy active genes enhanced transcriptional elongation zelda function drosophila embryo chromatin remodeling transcription (biology)

Notable Scholarly Works

Notable Federal Grants

Collaborators

A Dual Dna/Rna-Binding Factor Regulates Co-Transcriptional Splicing Through Target Rna Interaction and Modulates Splicing Factor Dynamics. bioRxiv (Cold Spring Harbor Laboratory) (2024)

Mukulika RayJulia ZaborowskyPranav MahableshwarkarSmriti VaidyanathanJasmine ShumRenjith ViswanathanAnnie HuangSzu-Huan WangVictoria JohnsonNoah WakeAshley M. ConardAlexander E. ConicellaRyan PuterbaughNicolas L. FawziErica Larschan

functional genomicsmolecular geneticsmolecular researchgeneticsmolecular sciencetranscription regulationmolecular biologyhnrnp splicing condensatesgene expressionnucleic acidsrna biologystructural biologygenome biologyprotein geneticsprotein sciencemembrane biologymolecular cell biologymolecular regulationbiomolecular engineering

BINDCOMPARE: A Novel Integrated Protein-Nucleic Acid Binding Analysis Platform. Bioinformatics (2024)

Pranav MahableshwarkarJasmine ShumMukulika RayErica Larschan

biological engineeringbiophysicsanalysis platformcomputational biologyprotein-nucleic acidstructural bioinformaticsprotein bioinformaticsbiomolecular engineeringbioinformatics

Comparative Analysis of Animal Lifespan. GeroScience (2023)

Nicole C. RiddlePeggy R. BigaAnne M. BronikowskiJames R. WaltersGerald S. WilkinsonJingyue Ellie DuanAnthony GambleErica LarschanRichard P. MeiselRitambhara SinghAshley Webb

animal lifespanlife historybiogerontologyageingbiologyexperimental gerontologycomparative analysisanimal kingdomevolutionary biologyhistorical biologylongevityaging process

Histone Mark Age of Human Tissues and Cells. bioRxiv (Cold Spring Harbor Laboratory) (2023)

Lucas Paulo de Lima CamilloMuhammad Haider AsifSteve HorvathErica LarschanRitambhara Singh

histone mark agebiologycell biologyageing

SCNODE: Generative Model for Temporal Single Cell Transcriptomic Data Prediction. bioRxiv (Cold Spring Harbor Laboratory) (2023)

Jiaqi ZhangErica LarschanJeremy BignessRitambhara Singh

translational bioinformaticscomputational biologybiomedical data scienceproteomicssingle-cell analysisgenomicsmolecular biologydata sciencesystems biologytranscriptomics technologycomputational genomicsbioinformaticsmachine learning

Sex-Specific Splicing Occurs Genome-Wide During Early Drosophila Embryogenesis. eLife (2023)

Mukulika RayAshley Mae ConardJennifer UrbanPranav MahableshwarkarJoseph AguileraAnnie HuangSmriti VaidyanathanErica Larschan

early drosophila embryogenesisinsect molecular biologysex-specific splicingdevelopmental biologygene expressiongenetics

The Clamp Ga-Binding Transcription Factor Regulates Heat Stress-Induced Transcriptional Repression by Associating With 3D Loop Anchors. bioRxiv (Cold Spring Harbor Laboratory) (2023)

Joseph AguileraJingyue DuanSo-min LeeMukulika RayErica Larschan

loop anchorsmolecular and cellular biologyinsect molecular biologyheat stresschromatin loop anchorstranscription factorsgenome biologygene regulationmolecular cell biologytranscription (biology)transcription regulationchromatinmolecular regulationsystems biologygene expressiongene regulatory networksgenetics

Integrating Long-Range Regulatory Interactions to Predict Gene Expression Using Graph Convolutional Networks. Journal of Computational Biology (2022)

Jeremy BignessXavier LoinazShalin PatelErica LarschanRitambhara Singh

computational biologylong-range regulatory interactionsgraph convolutional networkssystems biologygene expressionbioinformaticsmachine learning

Sex‐Specific Aging in Animals: Perspective and Future Directions. Aging Cell (2022)

Anne M. BronikowskiRichard P. MeiselPeggy R. BigaJames R. WaltersJudith E. MankErica LarschanGerald S. WilkinsonNicole ValenzuelaAshley Mae ConardJoão Pedro de MagalhãesJingyue (Ellie) DuanAmy E. EliasTony GambleRita M. GrazeKristin E. GribbleJill A. KreilingNicole C. Riddle

reproductive biologyaging cellmammalogybiogerontologyageingmolecular markersbiologyexperimental gerontologyreproductive sciencesex differencesabstract sex differencesmammalian biologylongevitygeneticsmammalian physiology

The Continuum of Drosophila Embryonic Development at Single-Cell Resolution. Science (2022)

Diego CalderonRonnie Blecher-GonenXingfan HuangStefano SecchiaJames KentroRiza M. DazaBeth MartinAlessandro DuljaChristoph SchaubCole TrapnellErica LarschanKate M. O’Connor-GilesEileen E. M. FurlongJay Shendure

insect molecular biologysingle-cell resolutionembryonic developmentsingle-cell analysisdevelopmental biologyavian biologymorphology (biology)

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Erica N Larschan

Associate Professor of Molecular Biology Cell Biology and Biochemistry John E Savage Assistant Professor of Computer Science and Data Science

Brown University

Affiliations

Division of Biology and Medicine

Molecular Biology, Cell Biology, and Biochemistry

Warren Alpert Medical School

Molecular Biology, Cell Biology, & Biochemistry

Honors

Create free account to unlock more features

Experiences

Create free account to unlock more features

Education

Create free account to unlock more features

Erica N Larschan

Brown University

Associate Professor of Molecular Biology Cell Biology and Biochemistry John E Savage Assistant Professor of Computer Science and Data Science

You can click a keyword to filter the displayed items

Notable Scholarly Works

Notable Federal Grants

Collaborators

A Dual Dna/Rna-Binding Factor Regulates Co-Transcriptional Splicing Through Target Rna Interaction and Modulates Splicing Factor Dynamics. bioRxiv (Cold Spring Harbor Laboratory) (2024)

BINDCOMPARE: A Novel Integrated Protein-Nucleic Acid Binding Analysis Platform. Bioinformatics (2024)

Pranav MahableshwarkarJasmine ShumMukulika RayErica Larschan

biological engineeringbiophysicsanalysis platformcomputational biologyprotein-nucleic acidstructural bioinformaticsprotein bioinformaticsbiomolecular engineeringbioinformatics

Comparative Analysis of Animal Lifespan. GeroScience (2023)

Nicole C. RiddlePeggy R. BigaAnne M. BronikowskiJames R. WaltersGerald S. WilkinsonJingyue Ellie DuanAnthony GambleErica LarschanRichard P. MeiselRitambhara SinghAshley Webb

animal lifespanlife historybiogerontologyageingbiologyexperimental gerontologycomparative analysisanimal kingdomevolutionary biologyhistorical biologylongevityaging process

Histone Mark Age of Human Tissues and Cells. bioRxiv (Cold Spring Harbor Laboratory) (2023)

Lucas Paulo de Lima CamilloMuhammad Haider AsifSteve HorvathErica LarschanRitambhara Singh

histone mark agebiologycell biologyageing

SCNODE: Generative Model for Temporal Single Cell Transcriptomic Data Prediction. bioRxiv (Cold Spring Harbor Laboratory) (2023)

Jiaqi ZhangErica LarschanJeremy BignessRitambhara Singh

Sex-Specific Splicing Occurs Genome-Wide During Early Drosophila Embryogenesis. eLife (2023)

Mukulika RayAshley Mae ConardJennifer UrbanPranav MahableshwarkarJoseph AguileraAnnie HuangSmriti VaidyanathanErica Larschan

early drosophila embryogenesisinsect molecular biologysex-specific splicingdevelopmental biologygene expressiongenetics

The Clamp Ga-Binding Transcription Factor Regulates Heat Stress-Induced Transcriptional Repression by Associating With 3D Loop Anchors. bioRxiv (Cold Spring Harbor Laboratory) (2023)

Joseph AguileraJingyue DuanSo-min LeeMukulika RayErica Larschan

Integrating Long-Range Regulatory Interactions to Predict Gene Expression Using Graph Convolutional Networks. Journal of Computational Biology (2022)

Jeremy BignessXavier LoinazShalin PatelErica LarschanRitambhara Singh

computational biologylong-range regulatory interactionsgraph convolutional networkssystems biologygene expressionbioinformaticsmachine learning

Sex‐Specific Aging in Animals: Perspective and Future Directions. Aging Cell (2022)

The Continuum of Drosophila Embryonic Development at Single-Cell Resolution. Science (2022)

insect molecular biologysingle-cell resolutionembryonic developmentsingle-cell analysisdevelopmental biologyavian biologymorphology (biology)

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chromatin remodeling

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