Faculty

Institution

Unit

Venue

Chris Wakefield

The University of Texas MD Anderson Cancer Center

Affiliations

Metabolomics Core Facility

Department Of Bioinformatics And Computational Biology

Department Of Statistical Analysis

The University of Texas MD Anderson Cancer Center

NoneChris Wakefield is currently serving as a Bioinformatics And Computational Biology faculty at The University of Texas Md Anderson Cancer Center.

Honors

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Experiences

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Education

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Chris Wakefield

The University of Texas MD Anderson Cancer Center

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critical care bioinformatics intensive care data science systems biology molecular biology oncology cancer care biomedical informatics scientific data interactive data exploration acute care visualization protein science geographical information science information visualization intensive care nursing critical care clinic protein bioinformatics prognostic evaluation molecular graphics biological network visualization molecular profiling data interactive exploration tumor biology functional genomics proteomics tumor microenvironment genomics proteome research clinical proteomics cancer discovery nature method scientific computing resuscitation thoracic oncology cancer genomics pathway analysis omics datasets proteomic technologies computational visualization real-time visualization acute liver failure prognosis critical emergency medicine scientific data management acute kidney injury protein modeling data representation principal component analysis independent component analysis dimensionality reduction exploratory data analysis linked data visualization geospatial data data exploration scientific visualization acute care surgery respiratory infections multilevel variant annotator precision genomics easy web-based tool intensive care unit galaxy implementation critically ill patients ill patients sofa score r package rppa space sos notebook illustrative applications abstract 5132 tcga data

Notable Scholarly Works

Notable Federal Grants

Collaborators

Pca-Plus: Enhanced Principal Component Analysis With Illustrative Applications to Batch Effects and Their Quantitation. bioRxiv (Cold Spring Harbor Laboratory) (2024)

principal component analysisillustrative applicationslinear algebradimensionality reductiondata scienceindependent component analysispattern recognitionstatistics

Supplementary Figure S1 From a Galaxy Implementation of Next-Generation Clustered Heatmaps for Interactive Exploration of Molecular Profiling Data. (2024)

interactive explorationbiomedical informaticsmolecular graphicsastronomyplanetary sciencesgalaxy clustersmolecular informaticsbiological network visualizationmolecular profiling datascientific datascientific visualizationsupplementary figure s1bioinformatics

Rppa Space: An R Package for Normalization and Quantitation of Reverse-Phase Protein Array Data. Bioinformatics (2022)

biomedical informaticsprotein sciencerppa spaceprotein modelingmolecular biologyprotein bioinformaticsprotein structuresystems biologyr packagebioinformatics

Interactive Clustered Heat Map Builder: An Easy Web-Based Tool for Creating Sophisticated Clustered Heat Maps. F1000Research (2020)

systems engineeringinformation visualizationdata and information visualizationscientific computingeasy web-based toolinteractive data explorationreal-time visualizationdata sciencegeographical information sciencevisualizationcomputational visualization

Sos Notebook: An Interactive Multi-Language Data Analysis Environment. Bioinformatics (2018)

data representationsos notebooklanguage resourcesinteractive data explorationlanguagedata managementanalytics

A Galaxy Implementation of Next-Generation Clustered Heatmaps for Interactive Exploration of Molecular Profiling Data. Cancer Research (2017)

interactive explorationbiomedical informaticsmolecular graphicsbiological network visualizationgalaxy implementationdata sciencescientific datasystems biologyomicsscientific data managementmolecular profiling databioinformatics

TRANSVAR: A Multilevel Variant Annotator for Precision Genomics. Nature Methods (2015)

Wanding ZhouTenghui ChenZechen ChongMary A RohrdanzJames M MelottChris WakefieldJia ZengJohn N WeinsteinFunda Meric-BernstamGordon B MillsKen Chen

genomicsprecision genomicsmultilevel variant annotatormolecular biologybioinformatics

Abstract 5132: Interactively Exploring Patterns in Tcga Data: A Web-Based Compendium of ‘Next-Generation’ Clustered Heat Maps.. Cancer Research (2013)

exploratory data analysisabstract 5132heat mapsdata integrationinformation visualizationlinked data visualizationdata and information visualizationtcga datageographyinteractive data explorationdata explorationgeospatial datadata sciencescientific datadata managementvisualizationgeographical information science

TCPA: A Resource for Cancer Functional Proteomics Data. Nature Methods (2013)

Jun LiYiling LuRehan AkbaniZhenlin JuPaul L RoebuckWenbin LiuJi-Yeon YangBradley M BroomRoeland G W VerhaakDavid W KaneChris WakefieldJohn N WeinsteinGordon B MillsHan Liang

proteomicstumor biologyprotein sciencenature methodbioinformaticsfunctional genomicsomics datasetscancer discoverypathway analysismolecular biologyclinical proteomicsprotein bioinformaticssystems biologyproteomic technologiescancer genomicsbiomolecular engineeringproteome researchtumor microenvironment

Cross-Validation of a Sequential Organ Failure Assessment Score–Based Model to Predict Mortality in Patients With Cancer Admitted to the Intensive Care Unit. Journal of Critical Care (2012)

Marylou Cárdenas-TuranzasJoe EnsorChris WakefieldKaren ZhangSusannah Kish WallaceKristen J. PriceJoseph L. Nates

epidemiologyintensive care unitthoracic oncologycritical emergency medicineemergency medicineprognosisacute caretraumaintensive carecritical caremortalityintensive care nursingpatient safetyresuscitationcancer careprognostic evaluationsurvival analysisoncologyacute liver failure

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Chris Wakefield

The University of Texas MD Anderson Cancer Center

Affiliations

Metabolomics Core Facility

Department Of Bioinformatics And Computational Biology

Department Of Statistical Analysis

The University of Texas MD Anderson Cancer Center

NoneChris Wakefield is currently serving as a Bioinformatics And Computational Biology faculty at The University of Texas Md Anderson Cancer Center.

Honors

Create free account to unlock more features

Experiences

Create free account to unlock more features

Education

Create free account to unlock more features

Chris Wakefield

The University of Texas MD Anderson Cancer Center

You can click a keyword to filter the displayed items

Notable Scholarly Works

Notable Federal Grants

Collaborators

Pca-Plus: Enhanced Principal Component Analysis With Illustrative Applications to Batch Effects and Their Quantitation. bioRxiv (Cold Spring Harbor Laboratory) (2024)

principal component analysisillustrative applicationslinear algebradimensionality reductiondata scienceindependent component analysispattern recognitionstatistics

Supplementary Figure S1 From a Galaxy Implementation of Next-Generation Clustered Heatmaps for Interactive Exploration of Molecular Profiling Data. (2024)

Rppa Space: An R Package for Normalization and Quantitation of Reverse-Phase Protein Array Data. Bioinformatics (2022)

biomedical informaticsprotein sciencerppa spaceprotein modelingmolecular biologyprotein bioinformaticsprotein structuresystems biologyr packagebioinformatics

Interactive Clustered Heat Map Builder: An Easy Web-Based Tool for Creating Sophisticated Clustered Heat Maps. F1000Research (2020)

Sos Notebook: An Interactive Multi-Language Data Analysis Environment. Bioinformatics (2018)

data representationsos notebooklanguage resourcesinteractive data explorationlanguagedata managementanalytics

A Galaxy Implementation of Next-Generation Clustered Heatmaps for Interactive Exploration of Molecular Profiling Data. Cancer Research (2017)

TRANSVAR: A Multilevel Variant Annotator for Precision Genomics. Nature Methods (2015)

Wanding ZhouTenghui ChenZechen ChongMary A RohrdanzJames M MelottChris WakefieldJia ZengJohn N WeinsteinFunda Meric-BernstamGordon B MillsKen Chen

genomicsprecision genomicsmultilevel variant annotatormolecular biologybioinformatics

Abstract 5132: Interactively Exploring Patterns in Tcga Data: A Web-Based Compendium of ‘Next-Generation’ Clustered Heat Maps.. Cancer Research (2013)

TCPA: A Resource for Cancer Functional Proteomics Data. Nature Methods (2013)

Jun LiYiling LuRehan AkbaniZhenlin JuPaul L RoebuckWenbin LiuJi-Yeon YangBradley M BroomRoeland G W VerhaakDavid W KaneChris WakefieldJohn N WeinsteinGordon B MillsHan Liang

Cross-Validation of a Sequential Organ Failure Assessment Score–Based Model to Predict Mortality in Patients With Cancer Admitted to the Intensive Care Unit. Journal of Critical Care (2012)

Marylou Cárdenas-TuranzasJoe EnsorChris WakefieldKaren ZhangSusannah Kish WallaceKristen J. PriceJoseph L. Nates

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