Faculty

Institution

Unit

Venue

Bo Li

University of California, San Diego

Affiliations

Physical Sciences

Mathematics

NoneBo Li is currently serving as a Mathematics faculty at University of California, San Diego.

Honors

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Experiences

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Education

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Bo Li

University of California, San Diego

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biophysics applied physics computational chemistry materials science chemistry physical chemistry theoretical chemistry mathematical chemistry mathematical physics variational implicit solvation mathematical biology protein science quantum chemistry molecular solvation nanotechnology interface science coulomb-field approximation nonpolar molecules microorganisms bacteria environmental microbiology applied microbiology numerical simulations mathematical sciences scientific computing microbial physiology variational analysis hydrodynamic stability ionic size effects level-set method poisson-boltzmann theory dielectric boundary force chemical sciences membrane science microbial cell factory spectral theory nonlinear science bacteriology theoretical modeling protein chemistry molecular recognition interface chemistry predictive microbiology stability analysis epitaxial growth numerical treatment cell polarity computational biophysics mathematical biophysics dense bacterial colonies hard agar colony growth non-uniform ionic sizes ionic solutions continuum electrostatics mean-field description nonuniform ionic sizes mathematical bioscience engineering numerical analysis applied mathematical modelling isogeometric analysis applied analysis applied mathematics

Notable Scholarly Works

Notable Federal Grants

Collaborators

Variational Implicit Solvation With Legendre-Transformed Poisson–Boltzmann Electrostatics. Proceedings of the Royal Society A Mathematical Physical and Engineering Sciences (2024)

Zunding HuangBo Li

mathematical physicsapplied mathematicslegendre-transformed poisson-boltzmann electrostaticsvariational implicit solvationmathematical sciences

Cell Polarity and Movement With Reaction-Diffusion and Moving Boundary: Rigorous Model Analysis and Robust Simulations. SIAM Journal on Applied Mathematics (2023)

Shuang LiuLi-Tien ChengBo Li

biophysicscell polarityapplied mathematicsmathematical biologycomputational biologyrigorous model analysisphysiologyrobust simulationsbiomechanics

Spatiotemporal Development of Growth and Death Zones in Expanding Bacterial Colonies Driven by Emergent Nutrient Dynamics. bioRxiv (Cold Spring Harbor Laboratory) (2023)

Harish KannanPaul SunTolga ÇağlarPantong YaoBrian R. TaylorKinshuk SahuDaotong GeMatteo MoriMya WarrenDavid KleinfeldJiaJia DongBo LiTerence Hwa

microbiologyradial colony expansionpredictive microbiologymicrobial cell factorybacteriabiologyapplied microbiologyvertical expansionescherichia coli cellsmicrobial physiologyenvironmental microbiologymicroorganisms

Explicit-Solute Implicit-Solvent Molecular Simulation With Binary Level-Set, Adaptive-Mobility, and GPU. Journal of Computational Physics (2022)

Shuang LiuZirui ZhangHsiao-Bing ChengLi-Tien ChengBo Li

scientific computingapplied mathematicsbinary level-setprotein sciencecomputer sciencemachine learningnumerical simulationscomputational science

A Generalized Rayleigh--Plesset Equation for Ions With Solvent Fluctuations. SIAM Journal on Applied Mathematics (2021)

Chao FanBo LiMichael R. White

fluid dynamicsapplied mathematicsgeneralized rayleighsolvent fluctuationsapplied physics

Coupling Monte Carlo, Variational Implicit Solvation, and Binary Level-Set for Simulations of Biomolecular Binding. Journal of Chemical Theory and Computation (2021)

Zirui ZhangClarisse G. RicciChao FanLi-Tien ChengBo LiJ. Andrew McCammon

biophysicschemistrymathematical biologybinary level-setbiomolecular bindingvariational implicit solvationmathematical chemistrytheoretical chemistrycomputational chemistry

Prediction of Multiple Dry–Wet Transition Pathways With a Mesoscale Variational Approach. The Journal of Chemical Physics (2021)

Shenggao ZhouYanan ZhangLi-Tien ChengBo Li

computational chemistryphysical chemistrychemistry

The Calculus of Boundary Variations and the Dielectric Boundary Force in the Poisson–Boltzmann Theory for Molecular Solvation. Journal of Nonlinear Science (2021)

Bo LiZhengfang ZhangShenggao Zhou

biophysicsmolecular solvationapplied mathematicsmathematical biologypoisson-boltzmann theorynonlinear sciencedielectric boundary forceboundary variations

Spatiotemporal Establishment of Dense Bacterial Colonies Growing on Hard Agar. eLife (2019)

Mya R WarrenHui SunYue YanJonas CremerBo LiTerence Hwa

biophysicsmicrobiologyenvironmental microbiologybiological engineeringbiofilmsbacteriadense bacterial colonieshard agarbacteriologycolony growthmicrobial physiologyapplied microbiologymicroorganisms

Variational Implicit-Solvent Predictions of the Dry–Wet Transition Pathways for Ligand–Receptor Binding and Unbinding Kinetics. Proceedings of the National Academy of Sciences (2019)

Shenggao ZhouR. Gregor WeißLi-Tien ChengJoachim DzubiellaJ. Andrew McCammonBo Li

surface sciencedry-wet transition pathwaysprotein sciencemolecular biophysicsneuroscienceligand-receptor bindingpharmacologymaterials sciencemembrane scienceunbinding kineticsmolecular pharmacologyvariational implicit-solvent predictions

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Bo Li

University of California, San Diego

Affiliations

Physical Sciences

Mathematics

NoneBo Li is currently serving as a Mathematics faculty at University of California, San Diego.

Honors

Create free account to unlock more features

Experiences

Create free account to unlock more features

Education

Create free account to unlock more features

Bo Li

University of California, San Diego

You can click a keyword to filter the displayed items

Notable Scholarly Works

Notable Federal Grants

Collaborators

Variational Implicit Solvation With Legendre-Transformed Poisson–Boltzmann Electrostatics. Proceedings of the Royal Society A Mathematical Physical and Engineering Sciences (2024)

Zunding HuangBo Li

mathematical physicsapplied mathematicslegendre-transformed poisson-boltzmann electrostaticsvariational implicit solvationmathematical sciences

Cell Polarity and Movement With Reaction-Diffusion and Moving Boundary: Rigorous Model Analysis and Robust Simulations. SIAM Journal on Applied Mathematics (2023)

Shuang LiuLi-Tien ChengBo Li

biophysicscell polarityapplied mathematicsmathematical biologycomputational biologyrigorous model analysisphysiologyrobust simulationsbiomechanics

Spatiotemporal Development of Growth and Death Zones in Expanding Bacterial Colonies Driven by Emergent Nutrient Dynamics. bioRxiv (Cold Spring Harbor Laboratory) (2023)

Harish KannanPaul SunTolga ÇağlarPantong YaoBrian R. TaylorKinshuk SahuDaotong GeMatteo MoriMya WarrenDavid KleinfeldJiaJia DongBo LiTerence Hwa

Explicit-Solute Implicit-Solvent Molecular Simulation With Binary Level-Set, Adaptive-Mobility, and GPU. Journal of Computational Physics (2022)

Shuang LiuZirui ZhangHsiao-Bing ChengLi-Tien ChengBo Li

scientific computingapplied mathematicsbinary level-setprotein sciencecomputer sciencemachine learningnumerical simulationscomputational science

A Generalized Rayleigh--Plesset Equation for Ions With Solvent Fluctuations. SIAM Journal on Applied Mathematics (2021)

Chao FanBo LiMichael R. White

fluid dynamicsapplied mathematicsgeneralized rayleighsolvent fluctuationsapplied physics

Coupling Monte Carlo, Variational Implicit Solvation, and Binary Level-Set for Simulations of Biomolecular Binding. Journal of Chemical Theory and Computation (2021)

Zirui ZhangClarisse G. RicciChao FanLi-Tien ChengBo LiJ. Andrew McCammon

biophysicschemistrymathematical biologybinary level-setbiomolecular bindingvariational implicit solvationmathematical chemistrytheoretical chemistrycomputational chemistry

Prediction of Multiple Dry–Wet Transition Pathways With a Mesoscale Variational Approach. The Journal of Chemical Physics (2021)

Shenggao ZhouYanan ZhangLi-Tien ChengBo Li

computational chemistryphysical chemistrychemistry

The Calculus of Boundary Variations and the Dielectric Boundary Force in the Poisson–Boltzmann Theory for Molecular Solvation. Journal of Nonlinear Science (2021)

Bo LiZhengfang ZhangShenggao Zhou

biophysicsmolecular solvationapplied mathematicsmathematical biologypoisson-boltzmann theorynonlinear sciencedielectric boundary forceboundary variations

Spatiotemporal Establishment of Dense Bacterial Colonies Growing on Hard Agar. eLife (2019)

Mya R WarrenHui SunYue YanJonas CremerBo LiTerence Hwa

biophysicsmicrobiologyenvironmental microbiologybiological engineeringbiofilmsbacteriadense bacterial colonieshard agarbacteriologycolony growthmicrobial physiologyapplied microbiologymicroorganisms

Variational Implicit-Solvent Predictions of the Dry–Wet Transition Pathways for Ligand–Receptor Binding and Unbinding Kinetics. Proceedings of the National Academy of Sciences (2019)

Shenggao ZhouR. Gregor WeißLi-Tien ChengJoachim DzubiellaJ. Andrew McCammonBo Li

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biomedical imaging

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multiscale modeling

Ralph E. Showalter

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diffusion process

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