Faculty

Institution

Unit

Venue

Anna Ritz

Margaret Oakley Dayhoff Associate Professor of Bioinformatics

Reed College

Affiliations

Reed College

Center for Teaching & Learning

Mathematical and Natural Sciences

Computer Science

Laboratories Of Kleinholtz Biological

Department Of Biology

History and Social Sciences

History

Anna Ritz is currently serving as a Center For Teaching & Learning Margaret Oakley Dayhoff Associate Professor of Bioinformatics at Reed College.

Honors

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Experiences

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Education

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Anna Ritz

Reed College

Margaret Oakley Dayhoff Associate Professor of Bioinformatics

You can click a keyword to filter the displayed items

systems biology computational biology bioinformatics biomedical informatics molecular biology pathway analysis biological networks network analysis genetics molecular informatics cell biology genome biology cell signaling genomics network science molecular cell biology gene expression proteomics theoretical biology interaction network signaling pathways regulatory network modelling global networks cellular biochemistry hypergraph theory protein science machine learning research structural molecular biology cancer biology biological network visualization medicinal research knowledge discovery sequence assembly cancer genomics next-generation sequencing computational genomics pathway engineering transformer neural networks automated reconstruction structural variants digital medicine cancer cells clinical proteomics proteome research language adaptation gene function proteomic technologies receptor tyrosine kinases translational proteomics cell culture protein phosphorylation neuroinformatics single molecules metric graph theory tumor heterogeneity genome sequencing genome analysis translational bioinformatics biological computation structural analysis structural identification scientific visualization interactive visualization network biology biological systems future directions oncogenic signaling blockade tyrosine phosphoproteome protein disruption tumor evolutionary trees paired-end sequencing data cancer genomes protein prediction tasks phosphorylation motif mixtures phosphoproteomics data structural variation analysis scientific communication applied mathematics computational science computer science mathematical bioscience data science informatics biosystems science and technology studies natural computing bio-inspired computation mathematical biology quantitative biology biophysics biostatistics

Notable Scholarly Works

Notable Federal Grants

Collaborators

Cnb-Mac 2023 Special Issue. Journal of Computational Biology (2025)

cnb-mac 2023

GRPHIN: Graphlet Characterization of Regulatory and Physical Interaction Networks. bioRxiv (Cold Spring Harbor Laboratory) (2025)

network sciencephysical interaction networkstheoretical biologyinteraction networkcomplex systemssystems biologyregulatory network modellingnetwork analysis

PROTEINWEAVER: A Webtool to Visualize Ontology-Annotated Protein Networks. PLoS ONE (2025)

ontology-annotated protein networksbiomedical informaticsproteomicsprotein sciencemolecular informaticsbiological network visualizationsemantic websystems biologyknowledge graphsbioinformatics

Current and Future Directions in Network Biology. Bioinformatics Advances (2024)

Marinka ZitnikMichelle M LiAydin WellsKimberly GlassDeisy Morselli GysiArjun KrishnanT M MuraliPredrag RadivojacSushmita RoyAnaïs BaudotSerdar BozdagDanny Z ChenLenore CowenKapil DevkotaAnthony GitterSara J C GoslinePengfei GuPietro H GuzziHeng HuangMeng JiangZiynet Nesibe KesimogluMehmet KoyuturkJian MaAlexander R PicoNataša PržuljTeresa M PrzytyckaBenjamin J RaphaelAnna RitzRoded SharanYang ShenMona SinghDonna K SlonimHanghang TongXinan Holly YangByung-Jun YoonHaiyuan YuTijana Milenković

network analysisknowledge graphscomputational biologyglobal networksknowledge discoverybiomedical informaticsbiological systemsdigital medicinebiological network visualizationbiological networksfuture directionsinteraction networkdata sciencenetwork biologysystems biologynetwork sciencebioinformatics

Simplifying Signaling Pathway Reconstruction With Containerized Random Walk Algorithms. (2024)

computational biologybiomedical informaticstheoretical biologypathway reconstructionbiological networkspathway analysissystems biologysignal transduction

From Network Analysis to Experimental Validation: Identification of Regulators of Non-Muscle Myosin II Contractility Using the Folded-Gastrulation Signaling Pathway. BMC Molecular and Cell Biology (2023)

cell physiologyphysiologymuscle functioncell signalingcell biologycellular physiologymolecular physiologymolecular cell biologyexperimental validationbiological chemistrysystems biologysignal transductionnetwork analysiscellular biochemistry

Growing Directed Acyclic Graphs: Optimization Functions for Pathway Reconstruction Algorithms. Journal of Computational Biology (2023)

graph algorithmsoptimization functionscomputational biologygraph theorytheoretical biologydirected graphsmolecular informaticsbiological networksmolecular biologysystems biologynetwork analysisapplied mathematics

Identification of Disease Modules Using Higher-Order Network Structure. Bioinformatics Advances (2023)

network sciencebiomedical informaticsdisease modulesbiological networkssystems biologynetwork analysis

Special Issue Computational Network Biology: Modeling, Analysis, and Control (Cnb-Mac) Workshop (2022). Journal of Computational Biology (2023)

Hyundoo JeongJosé Lugo-martinezAnna RitzYijie WangChi Zhang

computer sciencecomputational biology

Fit. Springer eBooks (2022)

Aysegul BuminAnna RitzDonna SlonimTamer KahveciKejun Huang

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Anna Ritz

Margaret Oakley Dayhoff Associate Professor of Bioinformatics

Reed College

Affiliations

Reed College

Center for Teaching & Learning

Mathematical and Natural Sciences

Computer Science

Laboratories Of Kleinholtz Biological

Department Of Biology

History and Social Sciences

History

Anna Ritz is currently serving as a Center For Teaching & Learning Margaret Oakley Dayhoff Associate Professor of Bioinformatics at Reed College.

Honors

Create free account to unlock more features

Experiences

Create free account to unlock more features

Education

Create free account to unlock more features

Anna Ritz

Reed College

Margaret Oakley Dayhoff Associate Professor of Bioinformatics

You can click a keyword to filter the displayed items

Notable Scholarly Works

Notable Federal Grants

Collaborators

Cnb-Mac 2023 Special Issue. Journal of Computational Biology (2025)

cnb-mac 2023

GRPHIN: Graphlet Characterization of Regulatory and Physical Interaction Networks. bioRxiv (Cold Spring Harbor Laboratory) (2025)

network sciencephysical interaction networkstheoretical biologyinteraction networkcomplex systemssystems biologyregulatory network modellingnetwork analysis

PROTEINWEAVER: A Webtool to Visualize Ontology-Annotated Protein Networks. PLoS ONE (2025)

ontology-annotated protein networksbiomedical informaticsproteomicsprotein sciencemolecular informaticsbiological network visualizationsemantic websystems biologyknowledge graphsbioinformatics

Current and Future Directions in Network Biology. Bioinformatics Advances (2024)

Simplifying Signaling Pathway Reconstruction With Containerized Random Walk Algorithms. (2024)

computational biologybiomedical informaticstheoretical biologypathway reconstructionbiological networkspathway analysissystems biologysignal transduction

Growing Directed Acyclic Graphs: Optimization Functions for Pathway Reconstruction Algorithms. Journal of Computational Biology (2023)

Identification of Disease Modules Using Higher-Order Network Structure. Bioinformatics Advances (2023)

network sciencebiomedical informaticsdisease modulesbiological networkssystems biologynetwork analysis

Special Issue Computational Network Biology: Modeling, Analysis, and Control (Cnb-Mac) Workshop (2022). Journal of Computational Biology (2023)

Hyundoo JeongJosé Lugo-martinezAnna RitzYijie WangChi Zhang

computer sciencecomputational biology

Fit. Springer eBooks (2022)

Aysegul BuminAnna RitzDonna SlonimTamer KahveciKejun Huang

1
2
3
4
5
6
7
10 / page