Faculty

Institution

Unit

Venue

Amy Marshall-Colon

Associate Professor

UIUC

Affiliations

College of Liberal Arts & Sciences

School of Integrative Biology

Department of Plant Biology

Amy Marshall-colon is currently serving as a College Of Liberal Arts & Sciences Associate Professor at Uiuc.

Honors

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Experiences

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Education

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Amy Marshall-Colon

UIUC

Associate Professor

You can click a keyword to filter the displayed items

genetics biology plant physiology gene expression functional genomics systems biology plant science transcription factors integrative plant biology plant molecular biology transcription (biology) genomics agricultural economics plant genomics botany molecular plant pathology plant metabolism molecular and cellular biology computational biology plant cells plant genetics precision agriculture theoretical biology plant biotechnology genome biology gene regulatory networks transcription regulation crop growth modeling regulatory network modelling plant stress molecular informatics experimental plant biology bioenergy sorghum agronomy mathematical bioscience molecular cell biology agricultural biotechnology photosynthesis gene regulation plant biochemistry phenomics biological models reactive oxygen species abiotic stress smart agriculture plant proteomics adaptation strategies climate change adaptation climate-smart agriculture biological systems garp transcription factors wrky1 gene function wrky1 transcription factor laser capture microdissection multiscale crop sustainable production crop cultivation crop yields crop production yield prediction sustainable crop production plant metabolomics phytochemistry synthetic plant biology target identification mathematical models biological computation yield potential crop photosynthesis global food demand primary root growth arabidopsis root tip temporal transcriptional logic nitrogen signaling transcription factor perturbations auxin transport global change biology environmental science crop ecology gene-by-environment interactions ecology climate change integrative modeling global ecology

Notable Scholarly Works

Notable Federal Grants

Collaborators

Mobile Gene Clusters and Coexpressed Plant–Rhizobium Pathways Drive Partner Quality Variation in Symbiosis. Proceedings of the National Academy of Sciences (2025)

Muhammad Rizwan RiazIvan Sosa MarquezHanna LindgrenGarrett LevinRebecca DoyleMario Cerón RomeroJulia C. PaoliJenny DrnevichChristopher J. FieldsBarney A. GeddesAmy Marshall-ColónKaty D. Heath

geneticsbiologyfunctional genomicsmolecular plant-microbe interactionsmicrobiologyplant-rhizobia interactiongenomicsplant genomicsmolecular plant pathologymolecular ecologysymbiosispartner qualitygenome biologylegume hostsmicrobial ecologyplant-microbe interactionsrhizospherepartner quality variation

Regulatory Analysis of Root Architectural and Anatomical Adaptation to Nitrate and Ammonium in Brachypodium Distachyon. bioRxiv (Cold Spring Harbor Laboratory) (2025)

Hamid RouinaDilkaran SinghChristopher ArltBabak MalekianLukas SchreiberBenjamin StichAmy Marshall-Colon

geneticsbiologyplant sciencegene expressionroot-soil interactionsammonium uptakeregulatory analysisdevelopmental biologyroot architecturalroot systemsplant physiologybotanymolecular and cellular biologyroot morphology

Stage-Resolved Gene Regulatory Network Analysis Reveals Developmental Reprogramming and Genes With Robust Stem-Preferred Expression in Sorghum. bioRxiv (Cold Spring Harbor Laboratory) (2025)

Jie FuBrandon JamesMadara Hetti-ArachchilageYingjie LeiBrian McKinleyEvan KurtzKerrie BarryStephen Patrick MooseJohn E. MulletKankshita SwaminathanAmy Marshall-Colon

geneticsgenetic engineeringsorghum stem biomassfunctional genomicsplant genomicsgene expressiongenomicsplant geneticsintegrative plant biologydevelopmental biologygene sequence annotationgenome biologytranscriptomics technologytranscriptomesorghum stem

Cell‐Type‐Specific Transcriptomics Uncovers Spatial Regulatory Networks in Bioenergy Sorghum Stems. The Plant Journal (2024)

Jie FuBrian McKinleyBrandon JamesWilliam ChrislerLye Meng MarkillieMatthew J. GaffreyHugh D. MitchellMuhammad Rizwan RiazBrenda MarcialGalya OrrKankshita SwaminathanJohn MulletAmy Marshall‐Colon

geneticsfunctional genomicsplant genomicsgene expressionspatial transcriptomic datasetgenomicstranscription factorsintegrative plant biologysystems biologylaser capture microdissectionplant proteomicsplant physiologytranscriptomebioenergy sorghumexperimental plant biology

Data for Emsl Project 51398 From February 2023. OSTI OAI (U.S. Department of Energy Office of Scientific and Technical Information) (2023)

Swaminathan, KankshitaMarshall-Colon, AmyMullet, John

data integrationstatistical softwarestatisticsscientific dataenergy datadata scienceemsl project 51398data modelingexploratory data analysisanalyticsdata managementdata-driven science

The Stem Cell-Type Transcriptome of Bioenergy Sorghum Reveals the Spatial Regulation of Secondary Cell Wall Networks. bioRxiv (Cold Spring Harbor Laboratory) (2023)

Jie FuBrian McKinleyBrandon JamesWilliam ChrislerLye Meng MarkillieMatthew J GaffreyHugh D MitchellGalya OrrKankshita SwaminathanJohn MulletAmy Marshall-Colon

functional genomicsplant cellsgene expressionplant biotechnologysecondary cell wallbioenergysystems biologylaser capture microdissectionplant proteomicsbiotechnologytranscriptomecell biologyplant physiologybioenergy sorghumexperimental plant biology

Additional File 16 of Gene Regulation Network Analyses of Pistil Development in Papaya. Figshare (2022)

Zhenyang LiaoFei DongJuan LiuLele XuAmy Marshall-ColonRay Ming

geneticsbiologyplant genomicsplant sciencemolecular geneticsgene expressiongenomicsexperimental botanyplant molecular biologypistil developmentplant geneticsdevelopmental biologypapaya maleadditional file 16plant physiologybotanyplant biology

Bioenergy Sorghum Stem Growth Regulation: Intercalary Meristem Localization, Development, and Gene Regulatory Network Analysis. The Plant Journal (2022)

Ka Man Jasmine YuJoel OliverBrian McKinleyBrock WeersHilary T. FabichNathan EvettsMark S. ConradiStephen A. AltobelliAmy Marshall‐ColonJohn Mullet

geneticsplant developmentplant cellsgene expressionbotanydevelopmental biologyplant physiologytranscriptomecell proliferationtranscriptome analysisplant hormonesim localizationplant cytology

Data for Emsl Project 51398 From August 2022. OSTI OAI (U.S. Department of Energy Office of Scientific and Technical Information) (2022)

Swaminathan, KankshitaMarshall-Colon, AmyMullet, John

data integrationstatistical softwarestatisticsscientific dataenergy datadata scienceemsl project 51398data modelingdata and information visualizationearth system scienceexploratory data analysisanalyticsdata managementdata-driven science

Data for Emsl Project 51398 From November 2022. OSTI OAI (U.S. Department of Energy Office of Scientific and Technical Information) (2022)

Swaminathan, KankshitaMarshall-Colon, AmyMullet, John

data integrationstatistical softwarestatisticsscientific dataenergy datadata scienceemsl project 51398data modelingdata and information visualizationenvironmental impact assessmentexploratory data analysisanalyticsdata managementdata-driven science

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Amy Marshall-Colon

Associate Professor

UIUC

Affiliations

College of Liberal Arts & Sciences

School of Integrative Biology

Department of Plant Biology

Amy Marshall-colon is currently serving as a College Of Liberal Arts & Sciences Associate Professor at Uiuc.

Honors

Create free account to unlock more features

Experiences

Create free account to unlock more features

Education

Create free account to unlock more features

Amy Marshall-Colon

UIUC

Associate Professor

You can click a keyword to filter the displayed items

Notable Scholarly Works

Notable Federal Grants

Collaborators

Mobile Gene Clusters and Coexpressed Plant–Rhizobium Pathways Drive Partner Quality Variation in Symbiosis. Proceedings of the National Academy of Sciences (2025)

Muhammad Rizwan RiazIvan Sosa MarquezHanna LindgrenGarrett LevinRebecca DoyleMario Cerón RomeroJulia C. PaoliJenny DrnevichChristopher J. FieldsBarney A. GeddesAmy Marshall-ColónKaty D. Heath

Regulatory Analysis of Root Architectural and Anatomical Adaptation to Nitrate and Ammonium in Brachypodium Distachyon. bioRxiv (Cold Spring Harbor Laboratory) (2025)

Hamid RouinaDilkaran SinghChristopher ArltBabak MalekianLukas SchreiberBenjamin StichAmy Marshall-Colon

Stage-Resolved Gene Regulatory Network Analysis Reveals Developmental Reprogramming and Genes With Robust Stem-Preferred Expression in Sorghum. bioRxiv (Cold Spring Harbor Laboratory) (2025)

Jie FuBrandon JamesMadara Hetti-ArachchilageYingjie LeiBrian McKinleyEvan KurtzKerrie BarryStephen Patrick MooseJohn E. MulletKankshita SwaminathanAmy Marshall-Colon

Cell‐Type‐Specific Transcriptomics Uncovers Spatial Regulatory Networks in Bioenergy Sorghum Stems. The Plant Journal (2024)

Jie FuBrian McKinleyBrandon JamesWilliam ChrislerLye Meng MarkillieMatthew J. GaffreyHugh D. MitchellMuhammad Rizwan RiazBrenda MarcialGalya OrrKankshita SwaminathanJohn MulletAmy Marshall‐Colon

Data for Emsl Project 51398 From February 2023. OSTI OAI (U.S. Department of Energy Office of Scientific and Technical Information) (2023)

Swaminathan, KankshitaMarshall-Colon, AmyMullet, John

data integrationstatistical softwarestatisticsscientific dataenergy datadata scienceemsl project 51398data modelingexploratory data analysisanalyticsdata managementdata-driven science

The Stem Cell-Type Transcriptome of Bioenergy Sorghum Reveals the Spatial Regulation of Secondary Cell Wall Networks. bioRxiv (Cold Spring Harbor Laboratory) (2023)

Jie FuBrian McKinleyBrandon JamesWilliam ChrislerLye Meng MarkillieMatthew J GaffreyHugh D MitchellGalya OrrKankshita SwaminathanJohn MulletAmy Marshall-Colon

Additional File 16 of Gene Regulation Network Analyses of Pistil Development in Papaya. Figshare (2022)

Zhenyang LiaoFei DongJuan LiuLele XuAmy Marshall-ColonRay Ming

Bioenergy Sorghum Stem Growth Regulation: Intercalary Meristem Localization, Development, and Gene Regulatory Network Analysis. The Plant Journal (2022)

Ka Man Jasmine YuJoel OliverBrian McKinleyBrock WeersHilary T. FabichNathan EvettsMark S. ConradiStephen A. AltobelliAmy Marshall‐ColonJohn Mullet

geneticsplant developmentplant cellsgene expressionbotanydevelopmental biologyplant physiologytranscriptomecell proliferationtranscriptome analysisplant hormonesim localizationplant cytology

Data for Emsl Project 51398 From August 2022. OSTI OAI (U.S. Department of Energy Office of Scientific and Technical Information) (2022)

Swaminathan, KankshitaMarshall-Colon, AmyMullet, John

Data for Emsl Project 51398 From November 2022. OSTI OAI (U.S. Department of Energy Office of Scientific and Technical Information) (2022)

Swaminathan, KankshitaMarshall-Colon, AmyMullet, John

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