Faculty

Institution

Unit

Venue

Aly Azeem Khan

Toyota Technological Institute at Chicago

Affiliations

Toyota Technological Institute at Chicago

NoneAly Azeem Khan is currently serving as a Toyota Technological Institute At Chicago faculty at Toyota Technological Institute At Chicago.

Honors

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Experiences

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Education

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Aly Azeem Khan

Toyota Technological Institute at Chicago

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immunology oncology genetics bioinformatics health sciences immune responses cancer research genomics medicinal research genome biology cell biology cancer genomics cancer biology tumor biology adaptive immune system cancer care cancer treatment gene expression deep learning thoracic oncology innate immune system transcriptomics technology laboratory medicine molecular diagnostics cell research cellular therapy next-generation sequencing clinical immunology single-cell analysis host response clinical investigation clinical microbiology clinical transplantation cell transplantation virus research gene regulation colorectal cancer microrna detection clinical evidence tumor targeting protein-protein interactions dendritic cells clinical validation single cells medical mycology nature surgical oncology protein assembly gene function multi-protein assembly genetic determinants precision medicine transcription regulation tolerance induction cell regulation innovative diagnostics analytical biotechnology cell therapy transplantation medicine graft survival genome analysis cancer immunosurveillance omics integration protein expression gender bias neoantigen prediction tumor epitope immunogenicity key parameters butyrate-producing bacterial strains food allergic infants sequence-based deep learning genomic regulatory element transcriptional programming clinical options genomic profiling innate lymphocytes

Notable Scholarly Works

Notable Federal Grants

Collaborators

Abstract 2351: Association of Germline Genetic Variants With Car T-Cell Therapy Outcomes. Cancer Research (2025)

Salem WerdyaniXiaotong SunYuanyuan ZhaPeter RiedellJustin KlineXin HeAly A. Khan

cancer researchgeneticscancer geneticsgermline genetic variantsgenetic variation

Hyperdiffusionfields (Hydif): Diffusion-Guided Hypernetworks for Learning Implicit Molecular Neural Fields. ArXiv.org (2025)

biophysicsdiffusion-based modelingdeep learningneurosciencemolecular informaticscomputational neuroscience

Spatial Proximity Sequencing Maps Developmental Dynamics in the Germinal Center. bioRxiv (Cold Spring Harbor Laboratory) (2025)

genomicsbiologydevelopmental systemgenome biologygenome studies

A Hybrid Computer Vision Model to Predict Lung Cancer in Diverse Populations. medRxiv (2024)

Abdul J. ZakkarNazia PerwaizWeiheng ZhongAlex KruleMason Burrage-BurtonDaniel KimMehak MiglaniVijeth NarraFarah YousefV.K. GadiMark C. KorpicsSage J. KimAly A. KhanYamilé MolinaYang DaiG. Elisabeta MaraiHadi MeidaniRyan H. NguyenAmeen A. Salahudeen

medical image computingpublic healthepidemiologybiomedical informaticsoncologyhybrid modelcancer screeninglung cancercancer disparitiescancer imagingcancer detectionlung cancer disparitiesthoracic oncologydigital medicinepersonalized medicine

Androgens Contribute to Sex Bias of Autoimmunity in Mice by T Cell-Intrinsic Regulation of Ptpn22 Phosphatase Expression. Nature Communications (2024)

Jean LeeLeonid A YurkovetskiyDerek ReimanLara FrommerZoe StrongAnthony ChangGeorge J KahalyAly A KhanAlexander V Chervonsky

autoimmunityimmunologyimmune responses

A Novel Method for Inferring B Cell Clonal Lineages From Single-Cell Rna Sequencing Data. The Journal of Immunology (2024)

Leah WeberDerek ReimanMrinmoy RoddurYuanyuan QiMohammed El-KebirAly Khan

affinity maturationnext-generation sequencingbioinformaticsb cellsgenomicsgenome biologymolecular ecologyb cell receptorevolutionary biologymolecular evolutionsingle cell sequencingtranscriptomegenetics

Computational Prediction of Protein Interactions in Single Cells by Proximity Sequencing. PLoS Computational Biology (2024)

Junjie XiaHoang Van PhanLuke VistainMengjie ChenAly A. KhanSavaş Tay

computational biologycell biologyproximity sequencingsingle-cell analysisprotein interactionssingle cellscomputational prediction

Improving Lung Cancer Health Equity by Applying Deep Learning to Low Dose Ct Screening of Minority and Disadvantaged Patients.. Journal of Clinical Oncology (2024)

Abdul ZakkarAlexander KruleMehak MiglaniVK GadiKevin KovitzMary PasquinelliFrank WeinbergYamile MolinaSage J KimAly KhanRyan Huu-Tuan NguyenAmeen Abdulla Salahudeen

public healthradiation oncologyhealth equitydeep learningcancer screeningrespiratory medicinelung cancermedicinethoracic oncologyclinical researchoncology

Isotype-Aware Inference of B Cell Clonal Lineage Trees From Single-Cell Sequencing Data. Cell Genomics (2024)

Leah L. WeberDerek ReimanMrinmoy S. RoddurYuanyuan QiMohammed El-KebirAly A. Khan

isotype-aware inferencecomputational biologynext-generation sequencingb cellsimmunologysingle-cell analysisgenomicsgenome biologyb cell evolutionmolecular diagnosticsimmunity (medicine)molecular evolutioncell researchsingle cell sequencingbioinformaticsgenetics

TRIBAL: Tree Inference of B Cell Clonal Lineages. Lecture notes in computer science (2024)

Leah L. WeberDerek ReimanMrinmoy S. RoddurYuanyuan QiMohammed El-KebirAly A. Khan

tree inferencecell lineagebiologyphylogeneticsgeneticsgenome biology

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Aly Azeem Khan

Toyota Technological Institute at Chicago

Affiliations

Toyota Technological Institute at Chicago

NoneAly Azeem Khan is currently serving as a Toyota Technological Institute At Chicago faculty at Toyota Technological Institute At Chicago.

Honors

Create free account to unlock more features

Experiences

Create free account to unlock more features

Education

Create free account to unlock more features

Aly Azeem Khan

Toyota Technological Institute at Chicago

You can click a keyword to filter the displayed items

Notable Scholarly Works

Notable Federal Grants

Collaborators

Abstract 2351: Association of Germline Genetic Variants With Car T-Cell Therapy Outcomes. Cancer Research (2025)

Salem WerdyaniXiaotong SunYuanyuan ZhaPeter RiedellJustin KlineXin HeAly A. Khan

cancer researchgeneticscancer geneticsgermline genetic variantsgenetic variation

Hyperdiffusionfields (Hydif): Diffusion-Guided Hypernetworks for Learning Implicit Molecular Neural Fields. ArXiv.org (2025)

biophysicsdiffusion-based modelingdeep learningneurosciencemolecular informaticscomputational neuroscience

Spatial Proximity Sequencing Maps Developmental Dynamics in the Germinal Center. bioRxiv (Cold Spring Harbor Laboratory) (2025)

genomicsbiologydevelopmental systemgenome biologygenome studies

A Hybrid Computer Vision Model to Predict Lung Cancer in Diverse Populations. medRxiv (2024)

Androgens Contribute to Sex Bias of Autoimmunity in Mice by T Cell-Intrinsic Regulation of Ptpn22 Phosphatase Expression. Nature Communications (2024)

Jean LeeLeonid A YurkovetskiyDerek ReimanLara FrommerZoe StrongAnthony ChangGeorge J KahalyAly A KhanAlexander V Chervonsky

autoimmunityimmunologyimmune responses

A Novel Method for Inferring B Cell Clonal Lineages From Single-Cell Rna Sequencing Data. The Journal of Immunology (2024)

Leah WeberDerek ReimanMrinmoy RoddurYuanyuan QiMohammed El-KebirAly Khan

Computational Prediction of Protein Interactions in Single Cells by Proximity Sequencing. PLoS Computational Biology (2024)

Junjie XiaHoang Van PhanLuke VistainMengjie ChenAly A. KhanSavaş Tay

computational biologycell biologyproximity sequencingsingle-cell analysisprotein interactionssingle cellscomputational prediction

Improving Lung Cancer Health Equity by Applying Deep Learning to Low Dose Ct Screening of Minority and Disadvantaged Patients.. Journal of Clinical Oncology (2024)

Abdul ZakkarAlexander KruleMehak MiglaniVK GadiKevin KovitzMary PasquinelliFrank WeinbergYamile MolinaSage J KimAly KhanRyan Huu-Tuan NguyenAmeen Abdulla Salahudeen

public healthradiation oncologyhealth equitydeep learningcancer screeningrespiratory medicinelung cancermedicinethoracic oncologyclinical researchoncology

Isotype-Aware Inference of B Cell Clonal Lineage Trees From Single-Cell Sequencing Data. Cell Genomics (2024)

Leah L. WeberDerek ReimanMrinmoy S. RoddurYuanyuan QiMohammed El-KebirAly A. Khan

TRIBAL: Tree Inference of B Cell Clonal Lineages. Lecture notes in computer science (2024)

Leah L. WeberDerek ReimanMrinmoy S. RoddurYuanyuan QiMohammed El-KebirAly A. Khan

tree inferencecell lineagebiologyphylogeneticsgeneticsgenome biology

1
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7
10 / page