Faculty

Institution

Unit

Venue

Alexander Edward Lipka

Assistant Professor

UIUC

Affiliations

College of Agricultural, Consumer and Environmental Sciences

Crop Sciences

Department of Crop Sciences

Alexander Edward Lipka is currently serving as a College Of Agricultural, Consumer And Environmental Sciences Assistant Professor at Uiuc.

Honors

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Experiences

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Education

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Alexander Edward Lipka

UIUC

Assistant Professor

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genetics genomics genetic variation quantitative genetics plant genetics genome biology plant genomics population genetics plant science biology agricultural biotechnology statistical genetics plant biotechnology biostatistics plant breeding genotype-phenotype association agronomy genome-wide association studies crop improvement heredity molecular breeding evolutionary biology functional genomics molecular plant pathology botany applied genetics experimental botany molecular ecology zea mays genetic epidemiology plant physiology crop protection plant disease integrative plant biology crop science plant molecular biology genome analysis genetic analysis forensic genetics computational genomics genetic diversity biomass yield genomic prediction carotenoids plant metabolism plant immunity population genomics biomedical informatics plant defense gene crop yields phenomics genome studies genomic selection molecular informatics genome sequencing plant biochemistry phenology experimental plant biology plant metabolomics plant stress abiotic stress crop physiology plant-virus interaction plant virus natural variation arabidopsis seed carotenoids early stages plant height association mapping significant snps network plasticity regulatory variation winter hardiness gapit package r package genome association genomic variants

Video Presentations

Notable Scholarly Works

Notable Federal Grants

Collaborators

Improving Multi-Trait Genomic Prediction Efficiency Through the Incorporation of Synthetic Traits Selected Based on Co-Heritability. bioRxiv (Cold Spring Harbor Laboratory) (2025)

Ashmita UpadhyayRuhana AzamMeilu YuanStefan IvanovicJohn N. FergusonRachel E. PaulOluwasanmi KoyejoMohammed El-KebirAlexander E. LipkaAndrew D. B. LeakeySamuel B. Fernandes

biostatisticsagricultural biotechnologyplant genomicsquantitative geneticsmolecular breedingplant scienceplant breedingpartial least squaresgenetic variationhigh-heritability secondary traitsgeneticsphenomicspopulation geneticsgenomicsplant biotechnologysynthetic traitsstatistical geneticsfunctional genomicsagronomyplant genetics

Optimizing Population Simulations to Accurately Parallel Empirical Data for Digital Breeding. bioRxiv (Cold Spring Harbor Laboratory) (2025)

Michael J. BurnsRafael Della ColettaSamuel B. FernandesMartin O. BohnAlexander E. LipkaCandice N. Hirsch

observed variance partitioninggeneticsquantitative geneticspopulation geneticsstatistical geneticsmolecular breedingdigital breedingbiostatisticsprecision breedinggenomicsgenotype-phenotype associationpopulation simulationsgenetic variationgenome-wide association studiesagricultural biotechnologygenome biology

Rare Variants in Crops: Theoretical Insights and Emerging Detection Strategies. in silico Plants (2025)

Talissa FlorianiAlexander E Lipka

variant interpretationgeneticsheritability problem ’genetic epidemiologydetection strategiesquantitative geneticspopulation geneticsstatistical geneticsheredityrare variantsbiostatisticsgenomicsgenotype-phenotype associationgenetic variationgenome-wide association studiesagricultural biotechnologygenome biology

Regulatory Variation Controlling Architectural Pleiotropy in Maize. Nature Communications (2025)

Edoardo BertoliniBrian R. RiceMax BraudJiani YangSarah HakeJosh StrableAlexander E. LipkaAndrea L. Eveland

developmental biologyplant genomicsgeneticsmolecular geneticsplant molecular biologyzea maysgene regulatory networksfunctional genomicsgenomicsintegrative plant biologyplant geneticsgenetic variationnetwork plasticityregulatory variationgenome biology

Vascular Pathogenicity of Xanthomonas Vasicola Pv. Vasculorum in Maize is Modulated by Tissue-Specific Host Resistance. Phytopathology (2025)

Alexander MullensTao ZhongAlexander LipkaPeter Balint-KurtiTiffany Jamann

microbiologyinduced resistancedifferent inoculation techniquesplant immunityinfectious diseasesmicrobial pathogenesisplant diseaseplant sciencepathogenesismolecular plant pathologybiologyplant-pathogen interactionsnon-host resistancemolecular plant-microbe interactionspathogensplant pathologytissue-specific host resistanceplant pathogens

Crop Modeling Suggests Limited Transpiration Would Increase Yield of Sorghum Across Drought-Prone Regions of the United States. Frontiers in Plant Science (2024)

Rubí RaymundoGreg McleanSarah Sexton-BowserAlexander E. LipkaGeoffrey P. Morris

lt sorghumcrop yieldscrop scienceagronomyearth sciencesustainable agriculturecrop growth modelingproduction researchlimited transpirationsorghum yieldagricultural economicsdrought

Current Challenges and Future of Agricultural Genomes to Phenomes in the USA. Genome biology (2024)

Christopher K. TuggleJennifer L. ClarkeBrenda M. MurdochEric LyonsNicole M. ScottBedrich BenešJacqueline D. CampbellHenri ChungCourtney L. DaigleSruti Das ChoudhuryJack C. M. DekkersJoao R. R. DóreaDavid S. ErtlMax FeldmanBreno O. FragomeniJanet E. FultonCarmela R. GuadagnoDarren E. HagenAndrew S. HessLuke M. KramerCarolyn J. Lawrence-DillAlexander E. LipkaThomas LübberstedtFiona M. McCarthyStephanie D. McKaySeth C. MurrayPenny K. RiggsTroy N. RowanMoira J. SheehanJuan P. SteibelAddie M. ThompsonKara J. ThorntonCurtis P. Van TassellPatrick S. Schnable

geneticsphenomicsgenome studiesagronomyagricultural genomegenomicsagricultural genomesgenome analysisgenetic variationphenome initiativeagricultural biotechnologyagricultural economicsgenome biology

Genomic Prediction of Cereal Crop Architectural Traits Using Models Informed by Gene Regulatory Circuitries From Maize. Genetics (2024)

Edoardo BertoliniMohith ManjunathWeihao GeMatthew D MurphyMirai InaokaChristina FliegeAndrea L EvelandAlexander E Lipka

plant genomicsgeneticsplant architecturezea maysquantitative geneticsgenomicsbiologyplant biotechnologyplant geneticsgenetic variationagricultural biotechnologygenome biologyarchitectural traits

A First Look at the Ability to Use Genomic Prediction for Improving the Ratooning Ability of Sugarcane. Frontiers in Plant Science (2023)

Md. Sariful IslamKeo CorakPer McCordAmanda M. Hulse-KempAlexander E. Lipka

geneticsfirst lookpopulation geneticsquantitative geneticsra traitsagronomyplant breedingmolecular markersgenomicscrop improvementplant geneticsgenetic variationagricultural biotechnologyagricultural economics

An Application of Vgwas to Differences in Flowering Time in Maize Across Mega‐Environments. Crop Science (2023)

Matthew D. MurphyAlexander E. Lipka

plant genomicsgeneticsquantitative geneticspopulation geneticsstatistical geneticseffect sizesbiostatisticsgenomicsgenotype-phenotype associationvariance gwasplant geneticsgenetic variationgenome-wide association studiesagricultural biotechnologyclimate changegenome biology

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Alexander Edward Lipka

Assistant Professor

UIUC

Affiliations

College of Agricultural, Consumer and Environmental Sciences

Crop Sciences

Department of Crop Sciences

Alexander Edward Lipka is currently serving as a College Of Agricultural, Consumer And Environmental Sciences Assistant Professor at Uiuc.

Honors

Create free account to unlock more features

Experiences

Create free account to unlock more features

Education

Create free account to unlock more features

Alexander Edward Lipka

UIUC

Assistant Professor

You can click a keyword to filter the displayed items

Video Presentations

Notable Scholarly Works

Notable Federal Grants

Collaborators

Improving Multi-Trait Genomic Prediction Efficiency Through the Incorporation of Synthetic Traits Selected Based on Co-Heritability. bioRxiv (Cold Spring Harbor Laboratory) (2025)

Ashmita UpadhyayRuhana AzamMeilu YuanStefan IvanovicJohn N. FergusonRachel E. PaulOluwasanmi KoyejoMohammed El-KebirAlexander E. LipkaAndrew D. B. LeakeySamuel B. Fernandes

Optimizing Population Simulations to Accurately Parallel Empirical Data for Digital Breeding. bioRxiv (Cold Spring Harbor Laboratory) (2025)

Michael J. BurnsRafael Della ColettaSamuel B. FernandesMartin O. BohnAlexander E. LipkaCandice N. Hirsch

Rare Variants in Crops: Theoretical Insights and Emerging Detection Strategies. in silico Plants (2025)

Talissa FlorianiAlexander E Lipka

Regulatory Variation Controlling Architectural Pleiotropy in Maize. Nature Communications (2025)

Edoardo BertoliniBrian R. RiceMax BraudJiani YangSarah HakeJosh StrableAlexander E. LipkaAndrea L. Eveland

Vascular Pathogenicity of Xanthomonas Vasicola Pv. Vasculorum in Maize is Modulated by Tissue-Specific Host Resistance. Phytopathology (2025)

Alexander MullensTao ZhongAlexander LipkaPeter Balint-KurtiTiffany Jamann

Crop Modeling Suggests Limited Transpiration Would Increase Yield of Sorghum Across Drought-Prone Regions of the United States. Frontiers in Plant Science (2024)

Rubí RaymundoGreg McleanSarah Sexton-BowserAlexander E. LipkaGeoffrey P. Morris

lt sorghumcrop yieldscrop scienceagronomyearth sciencesustainable agriculturecrop growth modelingproduction researchlimited transpirationsorghum yieldagricultural economicsdrought

Current Challenges and Future of Agricultural Genomes to Phenomes in the USA. Genome biology (2024)

geneticsphenomicsgenome studiesagronomyagricultural genomegenomicsagricultural genomesgenome analysisgenetic variationphenome initiativeagricultural biotechnologyagricultural economicsgenome biology

Genomic Prediction of Cereal Crop Architectural Traits Using Models Informed by Gene Regulatory Circuitries From Maize. Genetics (2024)

Edoardo BertoliniMohith ManjunathWeihao GeMatthew D MurphyMirai InaokaChristina FliegeAndrea L EvelandAlexander E Lipka

plant genomicsgeneticsplant architecturezea maysquantitative geneticsgenomicsbiologyplant biotechnologyplant geneticsgenetic variationagricultural biotechnologygenome biologyarchitectural traits

A First Look at the Ability to Use Genomic Prediction for Improving the Ratooning Ability of Sugarcane. Frontiers in Plant Science (2023)

Md. Sariful IslamKeo CorakPer McCordAmanda M. Hulse-KempAlexander E. Lipka

An Application of Vgwas to Differences in Flowering Time in Maize Across Mega‐Environments. Crop Science (2023)

Matthew D. MurphyAlexander E. Lipka

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5
13
10 / page